RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-210	ENST00000563112	BRS3	P32247	399 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	ZNF93	P35789	620 aa	Predicted RBP	13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	CEACAM3	P40198	252 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	KCNJ3	P48549	501 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	BDH1	Q02338	343 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	ST3GAL4	Q11206	333 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	DDI2	Q5TDH0	399 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	CCBE1	Q6UXH8	406 aa	Predicted RBP	13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	ASCL4	Q6XD76	172 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	C8orf59	Q8N0T1	100 aa	Predicted RBP	13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	OR4P4	Q8NGL7	312 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	OR10K1	Q8NGX5	313 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	GGH	Q92820	318 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	GHSR	Q92847	366 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	NCOR1P1	Q9H4R4	102 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	PCDHB16	Q9NRJ7	776 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	CKLF	Q9UBR5	152 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	CLEC2D	Q9UHP7	191 aa		13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	SIRT4	Q9Y6E7	314 aa	Predicted RBP	13.57	□□□□□ -0.24
CLK3-210	ENST00000563112	MEIKIN	A0A087WXM9	373 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	HSPB6	O14558	160 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	CD34	P28906	385 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	CAPG	P40121	348 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	DEFA6	Q01524	100 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	YIF1B	Q5BJH7	314 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	DMKN	Q6E0U4	476 aa	Predicted RBP	13.56	□□□□□ -0.24
CLK3-210	ENST00000563112		Q8NFD4	153 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	FAM110D	Q8TAY7	271 aa	Predicted RBP	13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	CAPSL	Q8WWF8	208 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	PPIL3	Q9H2H8	161 aa	Known RBP	13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	VCX	Q9H320	206 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	ZNF702P	Q9H963	129 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	FOXJ3	Q9UPW0	622 aa		13.56	□□□□□ -0.24
CLK3-210	ENST00000563112	TRAV24	A0A0B4J272	114 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	KBTBD11-OT1	A0A1B0GTJ5	212 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	FAM172BP	A6NC97	362 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	ZNF780A	O75290	641 aa	Predicted RBP	13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	CDRT1	O95170	752 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	TSPAN15	O95858	294 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	LALBA	P00709	142 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	NFYB	P25208	207 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	GLP1R	P43220	463 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	OR3A4P	P47883	348 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	TAS2R43	P59537	309 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	RIPK1	Q13546	671 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112		Q499Y3	187 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	BAIAP2L2	Q6UXY1	529 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112		Q8N2B8	174 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	OSR2	Q8N2R0	312 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	C11orf44	Q8N8P7	122 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	AKR1E2	Q96JD6	320 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	ZNF286A	Q9HBT8	521 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	IL36G	Q9NZH8	169 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	CNOT2	Q9NZN8	540 aa	Known RBP	13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	KIF25	Q9UIL4	384 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112	ST3GAL6	Q9Y274	331 aa		13.55	□□□□□ -0.24
CLK3-210	ENST00000563112		A0A087X0M5	115 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	TRBV5-5	A0A0J9YX44	114 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112		A0A1B0GX30	115 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	FAM90A22P	A8MWA6	464 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	KCNAB3	O43448	404 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	IGLV1-47	P01700	117 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	JUNB	P17275	347 aa	Predicted RBP	13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	GDNF	P39905	211 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	C17orf58	Q2M2W7	97 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	HLA-DRB5	Q30154	266 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	PIGY	Q3MUY2	71 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	OGFRL1	Q5TC84	451 aa	Predicted RBP	13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	C16orf82	Q7Z2V1	217 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	STX19	Q8N4C7	294 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	ZFP41	Q8N8Y5	198 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	OR13C5	Q8NGS8	318 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	OR9G1	Q8NH87	305 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	CFHR4	Q92496	578 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	CALY	Q9NYX4	217 aa		13.54	□□□□□ -0.24
CLK3-210	ENST00000563112	MEGF11	A6BM72	1044 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	OOSP1	A8MZH6	123 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	BUB1B-PAK6	H3BSN5	160 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	MYL12B	O14950	172 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	CASQ2	O14958	399 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	GPX5	O75715	221 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	OR7C1	O76099	320 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	IGFBP3	P17936	291 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	MNDA	P41218	407 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	PAX5	Q02548	391 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	GPR176	Q14439	515 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	RBM39	Q14498	530 aa	Known RBP	13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	HABP2	Q14520	560 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	NHLRC3	Q5JS37	347 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	RSBN1	Q5VWQ0	802 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	CCDC144NL	Q6NUI1	221 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	LINC00596	Q86U02	117 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	SUMF2	Q8NBJ7	301 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	BPIFB6	Q8NFQ5	453 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	OR13A1	Q8NGR1	328 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	ORAI1	Q96D31	301 aa		13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	ZNF184	Q99676	751 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	DPCD	Q9BVM2	203 aa	Predicted RBP	13.53	□□□□□ -0.24
CLK3-210	ENST00000563112	SERTAD4	Q9NUC0	356 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms