RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CARHSP1Q9Y2V2 147 aaKnown RBP6.24□□□□□ -1.41
VPS13C-206ENST00000558338 DOCK10Q96BY6 2186 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 LRP5LA4QPB2 252 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 CD300LBA8K4G0 201 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 ZNF732B4DXR9 585 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 GPR31O00270 319 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 ST8SIA3O43173 380 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 PHF1O43189 567 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-206ENST00000558338 KCNAB3O43448 404 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 MED6O75586 246 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 TNFSF15O95150 251 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 SNAPINO95295 136 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 NAPSAO96009 420 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 FAM157CP0CG43 387 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 PVALBP20472 110 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-206ENST00000558338 RFC3P40938 356 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 RAB5CP51148 216 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 CAV2P51636 162 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 GPM6AP51674 278 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 GNG3P63215 75 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 MRPL49Q13405 166 aaKnown RBP6.24□□□□□ -1.41
VPS13C-206ENST00000558338 GNMTQ14749 295 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 ZNF169Q14929 603 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-206ENST00000558338 PDCD1Q15116 288 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 PHLDA2Q53GA4 152 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 C10orf91Q5T1B1 145 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 PXDC1Q5TGL8 231 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 HES3Q5TGS1 186 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 RPL7L1Q6DKI1 246 aaKnown RBP6.24□□□□□ -1.41
VPS13C-206ENST00000558338 MOB1BQ7L9L4 216 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 PRR18Q8N4B5 295 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 IL22RA1Q8N6P7 574 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 BHLHE23Q8NDY6 225 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 OR1K1Q8NGR3 316 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 MSI2Q96DH6 328 aaKnown RBP6.24□□□□□ -1.41
VPS13C-206ENST00000558338 HES7Q9BYE0 225 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 MS4A7Q9GZW8 240 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-206ENST00000558338 LIME1Q9H400 295 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 TREM1Q9NP99 234 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 GLRX2Q9NS18 164 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 AMDHD2Q9Y303 409 aa6.24□□□□□ -1.41
VPS13C-206ENST00000558338 TECTAO75443 2155 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 TRGV5A0A0B4J1U4 118 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 C3orf85A0A1B0GTC6 90 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 A0A1W2PNU3 283 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-206ENST00000558338 TRDCB7Z8K6 153 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 F8W036 122 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 CDX4O14627 284 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-206ENST00000558338 MPPED1O15442 326 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 MBPP02686 304 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-206ENST00000558338 SEC11BP0C7V7 166 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 MMP9P14780 707 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 MDH2P40926 338 aaKnown RBP6.23□□□□□ -1.41
VPS13C-206ENST00000558338 NPBWR2P48146 333 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 TMEM33P57088 247 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 IL24Q13007 206 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 TBC1D28Q2M2D7 210 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 C9orf135Q5VTT2 229 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 FBXW9Q5XUX1 488 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 NUFIP2Q7Z417 695 aaKnown RBP6.23□□□□□ -1.41
VPS13C-206ENST00000558338 Q8IYB0 196 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 CMTM1Q8IZ96 169 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 NEK7Q8TDX7 302 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 GLYATL2Q8WU03 294 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 OR5P3Q8WZ94 311 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 IL22RA2Q969J5 263 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 PSMG3-AS1Q96PY0 264 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 TMEM222Q9H0R3 208 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 ARV1Q9H2C2 271 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 OBP2BQ9NPH6 170 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 PLA2G3Q9NZ20 509 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 ZNF581Q9P0T4 197 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 STRAPQ9Y3F4 350 aaKnown RBP6.23□□□□□ -1.41
VPS13C-206ENST00000558338 ATP23Q9Y6H3 246 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 USP34Q70CQ2 3546 aa6.23□□□□□ -1.41
VPS13C-206ENST00000558338 SLC22A20A6NK97 555 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 J3QT63 122 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 DNASE2O00115 360 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 ABCD4O14678 606 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 DEGS1O15121 323 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 ZNF806P0C7X5 589 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 SFTPCP11686 197 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 PRKACAP17612 351 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 BTF3P20290 206 aaKnown RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 CASP6P55212 293 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 SOX8P57073 446 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 ARG2P78540 354 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 TGFBR3Q03167 851 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 ZNF266Q14584 549 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 HMGN3Q15651 99 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 MST1LQ2TV78 715 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 SP6Q3SY56 376 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 TMEM177Q53S58 311 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 ZNF766Q5HY98 468 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 OR2A2Q6IF42 318 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 FAM122CQ6P4D5 195 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 DHRS13Q6UX07 377 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 LYZL2Q7Z4W2 148 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 MOGAT3Q86VF5 341 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 LDLRAD3Q86YD5 345 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms