RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 FAM96AQ9H5X1 160 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 EDA2RQ9HAV5 297 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 HEBP1Q9NRV9 189 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 MRPL27Q9P0M9 148 aaKnown RBP4.85□□□□□ -1.63
VPS29-210ENST00000552130 PCYOX1Q9UHG3 505 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 GLS2Q9UI32 602 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 JPT1Q9UK76 154 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 SIGLEC7Q9Y286 467 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 SLC25A15Q9Y619 301 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 WSB1Q9Y6I7 421 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 TMEM131Q92545 1883 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 VWA8A3KMH1 1905 aa4.85□□□□□ -1.63
VPS29-210ENST00000552130 GREB1LQ9C091 1923 aaPredicted RBP4.84□□□□□ -1.63
VPS29-210ENST00000552130 CAMTA1Q9Y6Y1 1673 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 SETD5Q9C0A6 1442 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 CCNB3Q8WWL7 1395 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 ASTN1O14525 1302 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 TRAV9-2A0A087WT02 112 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 PRAC2D3DTV9 90 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 NTN3O00634 580 aaPredicted RBP4.84□□□□□ -1.63
VPS29-210ENST00000552130 SERPINB7O75635 380 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 OR2A4O95047 310 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 ATP5G1P05496 136 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 BPGMP07738 259 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 SDC4P31431 198 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 CA5AP35218 305 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 CDKN2BP42772 138 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 PRDX4Q13162 271 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 HENMT1Q5T8I9 393 aaKnown RBP4.84□□□□□ -1.63
VPS29-210ENST00000552130 KDM4DQ6B0I6 523 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 NANOGP8Q6NSW7 305 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 FBXL22Q6P050 247 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 LPCAT3Q6P1A2 487 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 REG3GQ6UW15 175 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 C4orf22Q6V702 233 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 GDPGP1Q6ZNW5 385 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 ZNF550Q7Z398 422 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 DOLPP1Q86YN1 238 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 SLC22A18ASQ8N1D0 253 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 ZCCHC24Q8N2G6 241 aaKnown RBP4.84□□□□□ -1.63
VPS29-210ENST00000552130 NUP37Q8NFH4 326 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 OR52L1Q8NGH7 329 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 ZNRF2Q8NHG8 242 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 DNAJC9Q8WXX5 260 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 CCL17Q92583 94 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 EXOSC8Q96B26 276 aaKnown RBP4.84□□□□□ -1.63
VPS29-210ENST00000552130 TM4SF18Q96CE8 201 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 L3HYPDHQ96EM0 354 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 DNAJC30Q96LL9 226 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 FOPNLQ96NB1 174 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 OR2A7Q96R45 310 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 PARLQ9H300 379 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 NANOGQ9H9S0 305 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 PLSCR3Q9NRY6 295 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 C14orf105Q9NVL8 296 aa4.84□□□□□ -1.63
VPS29-210ENST00000552130 RBFOX1Q9NWB1 397 aaKnown RBP4.84□□□□□ -1.63
VPS29-210ENST00000552130 YTHDC2Q9H6S0 1430 aaKnown RBP4.83□□□□□ -1.64
VPS29-210ENST00000552130 LY6G6EA0A0G2JKS1 128 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 H3BP45 60 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 UPK2O00526 184 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 PFDN1O60925 122 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 GCM2O75603 506 aaPredicted RBP4.83□□□□□ -1.64
VPS29-210ENST00000552130 MARK3P27448 753 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 DDTP30046 118 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 CCL23P55773 120 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 CKS1BP61024 79 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 FHL1Q13642 323 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 IAH1Q2TAA2 248 aaPredicted RBP4.83□□□□□ -1.64
VPS29-210ENST00000552130 TCTEX1D4Q5JR98 221 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 FAM201AQ5SY85 155 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 TMEM236Q5W0B7 351 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 SCGB1D4Q6XE38 83 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 OOSP2Q86WS3 158 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 JOSD2Q8TAC2 188 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 ZNF519Q8TB69 540 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 BMFQ96LC9 184 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 SPACA5Q96QH8 159 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 C12orf57Q99622 126 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 VPS25Q9BRG1 176 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 CCDC32Q9BV29 185 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 GNB1LQ9BYB4 327 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 DEFB127Q9H1M4 99 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 NEU3Q9UQ49 428 aa4.83□□□□□ -1.64
VPS29-210ENST00000552130 C2orf16Q68DN1 1984 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 IGHV4-30-2A0A087WSY4 118 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 A0A0J9YXV3 536 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 A0A1W2PRE2 83 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 GMNCA6NCL1 334 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 SMIM1B2RUZ4 78 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 TMX2-CTNND1H3BSU7 103 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 HMGB3O15347 200 aaKnown RBP4.82□□□□□ -1.64
VPS29-210ENST00000552130 CCDC22O60826 627 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 GPX2P18283 190 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 NELFEP18615 380 aaKnown RBP4.82□□□□□ -1.64
VPS29-210ENST00000552130 PRTN3P24158 256 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 IL2RGP31785 369 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 P2RX1P51575 399 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 SLC18A1P54219 525 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 DAD1P61803 113 aa4.82□□□□□ -1.64
VPS29-210ENST00000552130 DEFA6Q01524 100 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms