RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 IRF3Q14653 427 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 AANATQ16613 207 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 LRRC75BQ2VPJ9 315 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 ACSM3Q53FZ2 586 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 NHLRC3Q5JS37 347 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 ZNF626Q68DY1 528 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 PRSS48Q7RTY5 328 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 LINC00596Q86U02 117 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 ZNF565Q8N9K5 539 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 TAF15Q92804 592 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCDC78-216ENST00000544996 UFD1Q92890 307 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 FOXRED1Q96CU9 486 aaPredicted RBP12.78□□□□□ -0.36
CCDC78-216ENST00000544996 COQ2Q96H96 371 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 ZNF747Q9BV97 191 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 CLEC7AQ9BXN2 247 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 TMEM133Q9H2Q1 129 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 TCF7L1Q9HCS4 588 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 MRPS28Q9Y2Q9 187 aaKnown RBP12.78□□□□□ -0.36
CCDC78-216ENST00000544996 MMP24Q9Y5R2 645 aa12.78□□□□□ -0.36
CCDC78-216ENST00000544996 MEIKINA0A087WXM9 373 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 TRAV24A0A0B4J272 114 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 ODF3BA8MYP8 253 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 H3BUX3 64 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 PIN1P1O15428 100 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 HSMCR30P0CW71 290 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 MDKP21741 143 aaPredicted RBP12.77□□□□□ -0.37
CCDC78-216ENST00000544996 CDK2P24941 298 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 RBM48Q5RL73 367 aaKnown RBP12.77□□□□□ -0.37
CCDC78-216ENST00000544996 AWAT2Q6E213 333 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 DHRS7BQ6IAN0 325 aaPredicted RBP12.77□□□□□ -0.37
CCDC78-216ENST00000544996 SHISA2Q6UWI4 295 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 GLIPR1L1Q6UWM5 242 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 HEPN1Q6WQI6 88 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 OR4D6Q8NGJ1 314 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 MUL1Q969V5 352 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 MALSU1Q96EH3 234 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 MRPS24Q96EL2 167 aaKnown RBP12.77□□□□□ -0.37
CCDC78-216ENST00000544996 AJUBAQ96IF1 538 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 IFT22Q9H7X7 185 aa12.77□□□□□ -0.37
CCDC78-216ENST00000544996 IGHV2-26A0A0B4J1V2 119 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 FAM90A8PA6NJQ4 464 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 ZNF729A6NN14 1252 aaPredicted RBP12.76□□□□□ -0.37
CCDC78-216ENST00000544996 GEMIN2O14893 280 aaKnown RBP12.76□□□□□ -0.37
CCDC78-216ENST00000544996 MPV17LQ2QL34 196 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 PRAMEF5Q5TYX0 476 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 LIPKQ5VXJ0 399 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 UNQ9370/PRO34162Q6UXP9 181 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 CEACAM19Q7Z692 300 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 LHFPL4Q7Z7J7 247 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 RTN4RL2Q86UN3 420 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 SUMF2Q8NBJ7 301 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 UQCC2Q9BRT2 126 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 DPCDQ9BVM2 203 aaPredicted RBP12.76□□□□□ -0.37
CCDC78-216ENST00000544996 PPIL3Q9H2H8 161 aaKnown RBP12.76□□□□□ -0.37
CCDC78-216ENST00000544996 NCOR1P1Q9H4R4 102 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 Q9H521 79 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 ABCB10Q9NRK6 738 aa12.76□□□□□ -0.37
CCDC78-216ENST00000544996 MMP23AO75900 390 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 GLP1RP43220 463 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 RELBQ01201 579 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 PAX5Q02548 391 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 TRAM1Q15629 374 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 SSX2Q16385 188 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 HSD17B12Q53GQ0 312 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 ATAD3CQ5T2N8 411 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 MINOS1Q5TGZ0 78 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 ABHD12Q8N2K0 398 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 NDNFQ8TB73 568 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 ZNF596Q8TC21 504 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 NEK7Q8TDX7 302 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 PHYHIPQ92561 330 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 SLITRK2Q9H156 845 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 SPACA1Q9HBV2 294 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 RAB18Q9NP72 206 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 ISYNA1Q9NPH2 558 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 GHRLQ9UBU3 117 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 KIF25Q9UIL4 384 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 MINOS1-NBL1R4GNA1 71 aa12.75□□□□□ -0.37
CCDC78-216ENST00000544996 KBTBD11-OT1A0A1B0GTJ5 212 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 A0A1W2PP11 408 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 CLPSL1A2RUU4 121 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 VGLL3A8MV65 326 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 TOR1AO14656 332 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 SRMP19623 302 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 PSMA1P25786 263 aaKnown RBP12.74□□□□□ -0.37
CCDC78-216ENST00000544996 PAX6P26367 422 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 HTR1DP28221 377 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 MLLT11Q13015 90 aaPredicted RBP12.74□□□□□ -0.37
CCDC78-216ENST00000544996 TPBGQ13641 420 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 INSL4Q14641 139 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 FAM189A2Q15884 450 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 LY6EQ16553 131 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 OLFML2AQ68BL7 652 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 GLT8D1Q68CQ7 371 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 SGMS2Q8NHU3 365 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 TMEM203Q969S6 136 aa12.74□□□□□ -0.37
CCDC78-216ENST00000544996 H3BUI4 141 aa12.73□□□□□ -0.37
CCDC78-216ENST00000544996 CRTAPO75718 401 aaPredicted RBP12.73□□□□□ -0.37
CCDC78-216ENST00000544996 SC5DO75845 299 aa12.73□□□□□ -0.37
CCDC78-216ENST00000544996 RBM39Q14498 530 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms