RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	ZNF502	Q8TBZ5	544 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	SMOC1	Q9H4F8	434 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	HILPDA	Q9Y5L2	63 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	APOM	O95445	188 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	NPS	P0C0P6	89 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	VDAC1	P21796	283 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	TMEM215	Q68D42	235 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	ZNF788	Q6ZQV5	615 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	CRYGN	Q8WXF5	182 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	GPR62	Q9BZJ7	368 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	C19orf53	Q9UNZ5	99 aa	Predicted RBP	7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	RIMS1	Q86UR5	1692 aa	Known RBP	7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	IGHV2-70	P01814	119 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	ERG	P11308	486 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	PSG1	P11464	419 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	LCN2	P80188	198 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	HHEX	Q03014	270 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	FBLIM1	Q8WUP2	373 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	LOXL4	Q96JB6	756 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	WNT5B	Q9H1J7	359 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	WDR54	Q9H977	334 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	ZNF355P	Q9NSJ1	428 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	TBX6	O95947	436 aa	Predicted RBP	7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	CBLN1	P23435	193 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	RPS4X	P62701	263 aa	Known RBP	7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	ZNF117	Q03924	483 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	CAMKMT	Q7Z624	323 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	BHLHE23	Q8NDY6	225 aa		7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	LCOR	Q96JN0	433 aa	Predicted RBP	7.75	□□□□□ -1.17
YBX3-208	ENST00000540447	GRP	P07492	148 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	OR3A4P	P47883	348 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	ZXDA	P98168	799 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	C1orf61	Q13536	156 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	KISS1	Q15726	138 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	SPINK9	Q5DT21	86 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	GFI1B	Q5VTD9	330 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	PP6455	Q8WZ26	134 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	GEMIN7	Q9H840	131 aa	Known RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	ERRFI1	Q9UJM3	462 aa	Predicted RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447		H0YGG7	62 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	TNFSF11	O14788	317 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	MC5R	P33032	325 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	ARR3	P36575	388 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	C17orf67	Q0P5P2	114 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	HEPN1	Q6WQI6	88 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	ZNF841	Q6ZN19	808 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	PDPN	Q86YL7	162 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	SGK494	Q96LW2	274 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	CITED2	Q99967	270 aa	Predicted RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	MANSC4	A6NHS7	340 aa	Predicted RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	CRX	O43186	299 aa	Predicted RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	TIMM8A	O60220	97 aa	Predicted RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	KBTBD11	O94819	623 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	ETHE1	O95571	254 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	CD8A	P01732	235 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	RAB9A	P51151	201 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	MEF2C	Q06413	473 aa	Predicted RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	IBA57	Q5T440	356 aa	Known RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	FBXL14	Q8N1E6	418 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	TMEM170A	Q8WVE7	144 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	KLHDC7B	Q96G42	594 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	RTL8A	Q9BWD3	113 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	SH3BGRL3	Q9H299	93 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	SEMA5B	Q9P283	1151 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	ARID1A	O14497	2285 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447		A0A1W2PR48	441 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	BIVM	Q86UB2	503 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	LSM10	Q969L4	123 aa	Known RBP	7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	WDR34	Q96EX3	536 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	KCNS1	Q96KK3	526 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	ANXA10	Q9UJ72	324 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	KLK13	Q9UKR3	277 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	RAMP1	O60894	148 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	HOXB2	P14652	356 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	IL3RA	P26951	378 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	C1QL4	Q86Z23	238 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	OR2V1	Q8NHB1	315 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	BOD1	Q96IK1	185 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	CST9L	Q9H4G1	147 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	TXNRD2	Q9NNW7	524 aa		7.74	□□□□□ -1.17
YBX3-208	ENST00000540447	FGF17	O60258	216 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	AMBP	P02760	352 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	CEACAM1	P13688	526 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	TIMM23B	Q5SRD1	257 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	C20orf196	Q8IYI0	205 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	GNB4	Q9HAV0	340 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	GDE1	Q9NZC3	331 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	BAZ2A	Q9UIF9	1905 aa	Known RBP	7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	PVR	P15151	417 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	EFNB2	P52799	333 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	NUBP1	P53384	320 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	CLDN15	P56746	228 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	SRSF3	P84103	164 aa	Known RBP	7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	OR4F17	Q8NGA8	305 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	GALM	Q96C23	342 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	IGSF21	Q96ID5	467 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	UFC1	Q9Y3C8	167 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	PIK3C2B	O00750	1634 aa		7.73	□□□□□ -1.17
YBX3-208	ENST00000540447	GAGE12B	A1L429	117 aa		7.73	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms