RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 SLC23A3Q6PIS1 610 aa10.84□□□□□ -0.67
SFSWAP-208ENST00000539506 WDR5BQ86VZ2 330 aa10.84□□□□□ -0.67
SFSWAP-208ENST00000539506 TMEM171Q8WVE6 324 aa10.84□□□□□ -0.67
SFSWAP-208ENST00000539506 POM121Q96HA1 1249 aa10.84□□□□□ -0.67
SFSWAP-208ENST00000539506 SLC2A9Q9NRM0 540 aa10.84□□□□□ -0.67
SFSWAP-208ENST00000539506 TMEM38BQ9NVV0 291 aa10.84□□□□□ -0.67
SFSWAP-208ENST00000539506 GAR1Q9NY12 217 aaKnown RBP10.84□□□□□ -0.67
SFSWAP-208ENST00000539506 NSG2Q9Y328 171 aa10.84□□□□□ -0.67
SFSWAP-208ENST00000539506 TMEM265A0A087WTH1 108 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 CARD18P57730 90 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 PSG4Q00888 419 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 DAZAP2Q15038 168 aaPredicted RBP10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 WIPI1Q5MNZ9 446 aaPredicted RBP10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 ZNF880Q6PDB4 577 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 LRP11Q86VZ4 500 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 GPR137CQ8N3F9 429 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 NECAP1Q8NC96 275 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 OR14L1PQ8NHC6 308 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 CA5BP1Q8WTZ4 195 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 ADGRG7Q96K78 797 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 RBFOX3A6NFN3 312 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 ZFP92A6NM28 416 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 SLC34A2O95436 690 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 NDUFB7P17568 137 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 DUSP1P28562 367 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 FOLR3P41439 243 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 P2RY1P47900 373 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 RAB5CP51148 216 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 EWSR1Q01844 656 aaKnown RBP eCLIP10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 TMEM187Q14656 261 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 PPA1Q15181 289 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 RAB35Q15286 201 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 KRTAP27-1Q3LI81 207 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 ZNF429Q86V71 674 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 OR1F12Q8NHA8 337 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 HPSE2Q8WWQ2 592 aa10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 ZNF845Q96IR2 970 aaPredicted RBP10.83□□□□□ -0.68
SFSWAP-208ENST00000539506 ZFHX4Q86UP3 3567 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 IGSF23A1L1A6 192 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 OR6C6A6NF89 314 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 ZNF587BE7ETH6 402 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BKO60814 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BJP06899 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HOXA5P20719 270 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BOP23527 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 OTX2P32243 289 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BBP33778 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BDP58876 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BCP62807 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 FAM189A2Q15884 450 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST2H2BEQ16778 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 OR2T2Q6IF00 324 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TIPARPQ7Z3E1 657 aaKnown RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BHQ93079 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 INTS12Q96CB8 462 aaKnown RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TAAR9Q96RI9 348 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BNQ99877 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HIST1H2BMQ99879 126 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TCEAL7Q9BRU2 100 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 NAA60Q9H7X0 242 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TERTO14746 1132 aaKnown RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 HMGB3O15347 200 aaKnown RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 ST8SIA3O43173 380 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 LCATP04180 440 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 ZNF92Q03936 586 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TRIM61Q5EBN2 209 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 FBXL14Q8N1E6 418 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TMEM105Q8N8V8 129 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 OR5C1Q8NGR4 320 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 OR10D3Q8NH80 312 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 ABHD3Q8WU67 409 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 C10orf35Q96D05 121 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 MUCL1Q96DR8 90 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 PBDC1Q9BVG4 233 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 SF3B5Q9BWJ5 86 aaKnown RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 WNT5BQ9H1J7 359 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TUBA4BQ9H853 241 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 ZDBF2Q9HCK1 2354 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 GPR137BO60478 399 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 IGHV3-9P01782 118 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 GAPDHP04406 335 aaKnown RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 CTSDP07339 412 aaPredicted RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 CST2P09228 141 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TUBG1P23258 451 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 SRD5A2P31213 254 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 ZNF154Q13106 437 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 ELOBQ15370 118 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 MPV17LQ2QL34 196 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 KHDC3LQ587J8 217 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 PEAR1Q5VY43 1037 aaPredicted RBP10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 LYPD6BQ8NI32 183 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 UBALD1Q8TB05 177 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 C14orf144Q96I85 54 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 SNX22Q96L94 193 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 WFIKKN1Q96NZ8 548 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 SSX3Q99909 188 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 DECR2Q9NUI1 292 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 GNG13Q9P2W3 67 aa10.82□□□□□ -0.68
SFSWAP-208ENST00000539506 TUBD1Q9UJT1 453 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms