RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 TMEM106AQ96A25 262 aa6.27□□□□□ -1.41
CD44-232ENST00000531118 CADM1Q9BY67 442 aaKnown RBP6.27□□□□□ -1.41
CD44-232ENST00000531118 TOLLIPQ9H0E2 274 aa6.27□□□□□ -1.41
CD44-232ENST00000531118 SEBOXQ9HB31 216 aaPredicted RBP6.27□□□□□ -1.41
CD44-232ENST00000531118 TAS2R1Q9NYW7 299 aa6.27□□□□□ -1.41
CD44-232ENST00000531118 MTCH1Q9NZJ7 389 aa6.27□□□□□ -1.41
CD44-232ENST00000531118 GLS2Q9UI32 602 aa6.27□□□□□ -1.41
CD44-232ENST00000531118 MRPS28Q9Y2Q9 187 aaKnown RBP6.27□□□□□ -1.41
CD44-232ENST00000531118 KLHDC2Q9Y2U9 406 aa6.27□□□□□ -1.41
CD44-232ENST00000531118 A0A1B0GVY2 172 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 ODAMA1E959 279 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 ZNF729A6NN14 1252 aaPredicted RBP6.26□□□□□ -1.41
CD44-232ENST00000531118 G3V318 75 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 SIRPB1O00241 398 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 EDF1O60869 148 aaKnown RBP6.26□□□□□ -1.41
CD44-232ENST00000531118 INMTO95050 263 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 IGHV3-7P01780 117 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 SOX6P35712 828 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 GLIPR1P48060 266 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 GNG10P50151 68 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 NUDT2P50583 147 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 SNU13P55769 128 aaKnown RBP6.26□□□□□ -1.41
CD44-232ENST00000531118 ZNF816Q0VGE8 651 aaPredicted RBP6.26□□□□□ -1.41
CD44-232ENST00000531118 C17orf58Q2M2W7 97 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 LGALS9CQ6DKI2 356 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 CEMP1Q6PRD7 247 aaPredicted RBP6.26□□□□□ -1.41
CD44-232ENST00000531118 OR2T10Q8NGZ9 312 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 LEAP2Q969E1 77 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 FAM162AQ96A26 154 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 C7orf34Q96L11 122 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 S1PR3Q99500 378 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 TEAD3Q99594 435 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 RASL11BQ9BPW5 248 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 CHCHD6Q9BRQ6 235 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 PBOV1Q9GZY1 135 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 MED20Q9H944 212 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 PLEKHA3Q9HB20 300 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 MED4Q9NPJ6 270 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 PLSCR3Q9NRY6 295 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 RBFOX1Q9NWB1 397 aaKnown RBP6.26□□□□□ -1.41
CD44-232ENST00000531118 CMTM6Q9NX76 183 aa6.26□□□□□ -1.41
CD44-232ENST00000531118 ZNF107Q9UII5 783 aaPredicted RBP6.26□□□□□ -1.41
CD44-232ENST00000531118 APOBP04114 4563 aaKnown RBP6.26□□□□□ -1.41
CD44-232ENST00000531118 IGKV1-27A0A075B6S5 117 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 IGHV1-3A0A0C4DH29 117 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 A0A0G2JND7 137 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 FUOMA2VDF0 154 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 DBX1A6NMT0 343 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 DLGAP1O14490 977 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 GSTA4O15217 222 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 ATP6V0E1O15342 81 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 SELENOFO60613 162 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 ENTPD6O75354 484 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 GADD45GO95257 159 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 NPPAP01160 153 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 DUSP1P28562 367 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 GLP1RP43220 463 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 REG1BP48304 166 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 RAB9AP51151 201 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 LINC00310P59036 64 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 AESQ08117 197 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 ZNF124Q15973 351 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 SLC25A26Q70HW3 274 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 MOB3BQ86TA1 216 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 ENTHD1Q8IYW4 607 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 RP9Q8TA86 221 aaKnown RBP6.25□□□□□ -1.41
CD44-232ENST00000531118 GNPDA2Q8TDQ7 276 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 COQ2Q96H96 371 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 MNTQ99583 582 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 ELOVL1Q9BW60 279 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 NUFIP1Q9UHK0 495 aaKnown RBP6.25□□□□□ -1.41
CD44-232ENST00000531118 WSB1Q9Y6I7 421 aa6.25□□□□□ -1.41
CD44-232ENST00000531118 TRBV2A0A0J9YWF9 115 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 TMEM269A0A1B0GVZ9 245 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 FAM230AA0A1W2PPH8 454 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 FAM90A10PA6NDY2 464 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 ACOD1A6NK06 481 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 RIIAD1A6NNX1 92 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 H0Y980 276 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 ATP8B1O43520 1251 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 RGS11O94810 467 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 OR2H2O95918 312 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 IFNGP01579 166 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 SLC2A2P11168 524 aaPredicted RBP6.24□□□□□ -1.41
CD44-232ENST00000531118 NCK1P16333 377 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 ZNF3P17036 446 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 PRKACAP17612 351 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 IFNGR2P38484 337 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 SMIM11AP58511 58 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 CDC42P60953 191 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 EWSR1Q01844 656 aaKnown RBP eCLIP6.24□□□□□ -1.41
CD44-232ENST00000531118 LIPEQ05469 1076 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 MFGE8Q08431 387 aaPredicted RBP6.24□□□□□ -1.41
CD44-232ENST00000531118 ATXN7L3Q14CW9 347 aaPredicted RBP6.24□□□□□ -1.41
CD44-232ENST00000531118 ZNF146Q15072 292 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 MAPRE2Q15555 327 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 SPIN3Q5JUX0 258 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 ARPINQ7Z6K5 226 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 Q8IYB0 196 aa6.24□□□□□ -1.41
CD44-232ENST00000531118 OR9Q2Q8NGE9 314 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms