RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 OR13A1Q8NGR1 328 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 TNFAIP8L1Q8WVP5 186 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 APH1BQ8WW43 257 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 SGCDQ92629 289 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 LEAP2Q969E1 77 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 KIRREL1Q96J84 757 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 MYCBPQ99417 103 aaPredicted RBP17.21■□□□□ 0.35
USP40-215ENST00000484528 INPP5EQ9NRR6 644 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 TAS2R4Q9NYW5 299 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 OR6C3Q9NZP0 311 aa17.21■□□□□ 0.35
USP40-215ENST00000484528 MEIKINA0A087WXM9 373 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 TRAV24A0A0B4J272 114 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 LOC100130705A0A1B0GUX0 176 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 ALX3O95076 343 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 RAB3AP20336 220 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 CD83Q01151 205 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 LTC4SQ16873 150 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 PIGYQ3MUY2 71 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 TCTEX1D4Q5JR98 221 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 C9orf152Q5JTZ5 239 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 XAF1Q6GPH4 301 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 C10orf99Q6UWK7 81 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 OR51T1Q8NGJ9 327 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 FAM118AQ9NWS6 357 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 CALYQ9NYX4 217 aa17.2■□□□□ 0.34
USP40-215ENST00000484528 A0A087X0M5 115 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 KBTBD11-OT1A0A1B0GTJ5 212 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 A0A1B0GX30 115 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 OR2F2O95006 317 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 AMY1AP04745 511 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 AMY2AP04746 511 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 LIMS3P0CW19 117 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 LIMS4P0CW20 117 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 PRRX1P54821 245 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 MRPL28Q13084 256 aaKnown RBP17.19■□□□□ 0.34
USP40-215ENST00000484528 SMN1Q16637 294 aaKnown RBP17.19■□□□□ 0.34
USP40-215ENST00000484528 CNIH3Q8TBE1 160 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 PLPPR1Q8TBJ4 325 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 PHF21AQ96BD5 680 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 RBM14Q96PK6 669 aaKnown RBP17.19■□□□□ 0.34
USP40-215ENST00000484528 JAM3Q9BX67 310 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 ZNF581Q9P0T4 197 aa17.19■□□□□ 0.34
USP40-215ENST00000484528 RPL36Q9Y3U8 105 aaKnown RBP17.19■□□□□ 0.34
USP40-215ENST00000484528 TRAV39A0A0B4J263 110 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 LY6LH3BQJ8 138 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 PIN1P1O15428 100 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 MAGEB3O15480 346 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 PF4V1P10720 104 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 KHDC1LQ5JSQ8 128 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 ELP2Q6IA86 826 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 PQLC1Q8N2U9 271 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 PXT1Q8NFP0 134 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 OR9G1Q8NH87 305 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 MRAPQ8TCY5 172 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 MRGPRDQ8TDS7 321 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 TOMM40LQ969M1 308 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 CREB3L1Q96BA8 519 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 S100A14Q9HCY8 104 aa17.18■□□□□ 0.34
USP40-215ENST00000484528 TCRBV4S1A1TA0A5B7 111 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 CDRT1O95170 752 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 HTR3BO95264 441 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 RPSAP08865 295 aaKnown RBP17.17■□□□□ 0.34
USP40-215ENST00000484528 CGB3P0DN86 165 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 CGB7P0DN87 165 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 CD33P20138 364 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 MNDAP41218 407 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 GNG10P50151 68 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 RSU1Q15404 277 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 KLHL22Q53GT1 634 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 ZNF529Q6P280 563 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 REC114Q7Z4M0 266 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 RFESDQ8TAC1 157 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 MYDGFQ969H8 173 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 RPEQ96AT9 228 aa17.17■□□□□ 0.34
USP40-215ENST00000484528 CPNE2Q96FN4 548 aaPredicted RBP17.17■□□□□ 0.34
USP40-215ENST00000484528 MRPS18AQ9NVS2 196 aaKnown RBP17.17■□□□□ 0.34
USP40-215ENST00000484528 WBP4O75554 376 aaKnown RBP17.16■□□□□ 0.34
USP40-215ENST00000484528 IL1AP01583 271 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 IGLL1P15814 213 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 ETV1P50549 477 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 DIAPH2-AS1Q14236 149 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 IL13RA2Q14627 380 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 OR2G6Q5TZ20 316 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 RSBN1Q5VWQ0 802 aaPredicted RBP17.16■□□□□ 0.34
USP40-215ENST00000484528 CCDC144NLQ6NUI1 221 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 OR56B4Q8NH76 319 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 GPR148Q8TDV2 347 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 ORAI1Q96D31 301 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 NECAP2Q9NVZ3 263 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 AURKAIP1Q9NWT8 199 aaPredicted RBP17.16■□□□□ 0.34
USP40-215ENST00000484528 IDI2-AS1Q9NZ38 188 aa17.16■□□□□ 0.34
USP40-215ENST00000484528 OOSP1A8MZH6 123 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 J3QR06 171 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 PF4P02776 101 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 CD2P06729 351 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 SNRNP70P08621 437 aaKnown RBP17.15■□□□□ 0.34
USP40-215ENST00000484528 C21orf33P30042 268 aaPredicted RBP17.15■□□□□ 0.34
USP40-215ENST00000484528 SSTR5P35346 364 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 ZNF565Q8N9K5 539 aa17.15■□□□□ 0.34
USP40-215ENST00000484528 OR4X2Q8NGF9 303 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms