RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 GCGP01275 180 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 IGHV2-5P01817 119 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 MBP02144 154 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 BCHEP06276 602 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 HOXC4P09017 264 aaPredicted RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 OR5AC1P0C628 307 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OR4E1P0C645 316 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 ZNF35P13682 527 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 ATP1B2P14415 290 aaPredicted RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 NT5EP21589 574 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 ZBTB25P24278 435 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 MMP11P24347 488 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 CDK2P24941 298 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 CRABP1P29762 137 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 DDTP30046 118 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 CD52P31358 61 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 MPIP34949 423 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 TAGLN2P37802 199 aaKnown RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 OPRD1P41143 372 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 HTR5AP47898 357 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 RHOAP61586 193 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 RAP1AP62834 184 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 RPL19P84098 196 aaKnown RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 SERTAD2Q14140 314 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 ARHGAP19Q14CB8 494 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 RSU1Q15404 277 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 TOMM34Q15785 309 aaPredicted RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 USF2Q15853 346 aaPredicted RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 FAM74A3Q4VXF1 159 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 C10orf120Q5SQS8 335 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OR2G6Q5TZ20 316 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OR5M10Q6IEU7 315 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 FAM71E1Q6IPT2 247 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 ARL9Q6T311 187 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OPN5Q6U736 354 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 CXCL17Q6UXB2 119 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 CD300LGQ6UXG3 332 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 TMIGD1Q6UXZ0 262 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 DNM1P46Q6ZS02 220 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 COMMD6Q7Z4G1 85 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 C6orf120Q7Z4R8 191 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 TSEN54Q7Z6J9 526 aaKnown RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 C9orf40Q8IXQ3 194 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 CLECL1Q8IZS7 167 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OR5T1Q8NG75 326 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OR5T3Q8NGG3 340 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OR2G2Q8NGZ5 317 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 LKAAEAR1Q8TD35 194 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OR8D1Q8WZ84 308 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 GHSRQ92847 366 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 MAL2Q969L2 176 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 CMBLQ96DG6 245 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 C14orf79Q96F83 325 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 PIK3IP1Q96FE7 263 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 SMIM8Q96KF7 97 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 CNN2Q99439 309 aaKnown RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 CMSS1Q9BQ75 279 aaKnown RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 NRIP2Q9BQI9 281 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 GGACTQ9BVM4 153 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 GPR61Q9BZJ8 451 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 BCL2L14Q9BZR8 327 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 OPN3Q9H1Y3 402 aaPredicted RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 RHOFQ9HBH0 211 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 TMEM27Q9HBJ8 222 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 EXOSC3Q9NQT5 275 aaKnown RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 TMEM242Q9NWH2 141 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 PITPNC1Q9UKF7 332 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 SLC22A14Q9Y267 594 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 NOP16Q9Y3C1 178 aaKnown RBP4.19□□□□□ -1.74
USP40-213ENST00000483216 TIMM10BQ9Y5J6 103 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 SHROOM3Q8TF72 1996 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 NLRC5Q86WI3 1866 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 NUP205Q92621 2012 aa4.19□□□□□ -1.74
USP40-213ENST00000483216 GBF1Q92538 1859 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 MYO16Q9Y6X6 1858 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 IGLV3-16A0A075B6K0 115 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 C9orf170A2RU37 121 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 TMEM212A6NML5 194 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 OR52A4PA6NMU1 304 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 UMAD1C9J7I0 102 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 MKRN2OSH3BPM6 223 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.18□□□□□ -1.74
USP40-213ENST00000483216 J3QLW9 94 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 J3QRE1 110 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 PRRG1O14668 218 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 VEGFDO43915 354 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 NDUFS6O75380 124 aaKnown RBP4.18□□□□□ -1.74
USP40-213ENST00000483216 B3GAT3O94766 335 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 GLSO94925 669 aaPredicted RBP4.18□□□□□ -1.74
USP40-213ENST00000483216 LYPD3O95274 346 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 SOX14O95416 240 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 SIX6O95475 246 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 RAB3DO95716 219 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 CST4P01036 141 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 IFNA21P01568 189 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 IGLV3-27P01718 113 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 OPN1SWP03999 348 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 CD74P04233 296 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 GUSBP08236 651 aa4.18□□□□□ -1.74
USP40-213ENST00000483216 CD14P08571 375 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms