RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 KIF25Q9UIL4 384 aa9.53□□□□□ -0.88
CUX1-207ENST00000465461 STUB1Q9UNE7 303 aa9.53□□□□□ -0.88
CUX1-207ENST00000465461 DSCAML1Q8TD84 2053 aa9.52□□□□□ -0.88
CUX1-207ENST00000465461 A0A087WXM4 84 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 A0A0B4J203 849 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 A0A1W2PPH5 198 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 ODAMA1E959 279 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 FAM172BPA6NC97 362 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 CD37P11049 281 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 CD36P16671 472 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 OMGP23515 440 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 HILS1P60008 231 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 MEF2CQ06413 473 aaPredicted RBP9.52□□□□□ -0.89
CUX1-207ENST00000465461 PLA2G7Q13093 441 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 BAMBIQ13145 260 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 SCGB2A2Q13296 93 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 UNC119Q13432 240 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 NHLRC3Q5JS37 347 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 UTF1Q5T230 341 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 PRAMEF5Q5TYX0 476 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 RSBN1Q5VWQ0 802 aaPredicted RBP9.52□□□□□ -0.89
CUX1-207ENST00000465461 SIGIRRQ6IA17 410 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 C9orf139Q6ZV77 190 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 NR2C2APQ86WQ0 139 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 OR51D1Q8NGF3 324 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 OR13A1Q8NGR1 328 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 CCDC107Q8WV48 283 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 TAF15Q92804 592 aaKnown RBP eCLIP9.52□□□□□ -0.89
CUX1-207ENST00000465461 ZDHHC16Q969W1 377 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 CHCHD6Q9BRQ6 235 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 NICN1Q9BSH3 213 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 SUCNR1Q9BXA5 334 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 ZNF696Q9H7X3 374 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 PCDHB16Q9NRJ7 776 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 LINC00312Q9Y6C7 94 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 V9GY05 133 aa9.52□□□□□ -0.89
CUX1-207ENST00000465461 MEIKINA0A087WXM9 373 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 TRGV10A0A0A0MS01 117 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 LOC100506127A0A0U1RQW1 187 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 UBE2QL1A1L167 161 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 MEIOCA2RUB1 952 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 RNF212BA8MTL3 300 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 SLC17A2O00624 439 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 NPFFO15130 113 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 CSN2P05814 226 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 IGHV1-8P0DP01 117 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 MYL9P24844 172 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 TGFBR1P36897 503 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 QRFPP83859 136 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 RAB11BQ15907 218 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 LTC4SQ16873 150 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 MPV17LQ2QL34 196 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 TUSC1Q2TAM9 212 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 NKAPLQ5M9Q1 402 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 RAB12Q6IQ22 244 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 RBMS3Q6XE24 437 aaKnown RBP9.51□□□□□ -0.89
CUX1-207ENST00000465461 OR6M1Q8NGM8 313 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 UBALD1Q8TB05 177 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 MRGPRDQ8TDS7 321 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 NEK7Q8TDX7 302 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 Q96M66 194 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 BARHL1Q9BZE3 327 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 IFT22Q9H7X7 185 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 UNKLQ9H9P5 680 aaKnown RBP9.51□□□□□ -0.89
CUX1-207ENST00000465461 GHRLQ9UBU3 117 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 SSR3Q9UNL2 185 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 PEX16Q9Y5Y5 336 aa9.51□□□□□ -0.89
CUX1-207ENST00000465461 KIAA2026Q5HYC2 2103 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 A0A0A6YYD4 124 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 TRAV1-2A0A0B4J238 106 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 DNAJC9-AS1A6NH13 148 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 TMEM14DPA8MWL7 114 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 PDCD5O14737 125 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 HOXA3O43365 443 aaPredicted RBP9.5□□□□□ -0.89
CUX1-207ENST00000465461 IGHV3-7P01780 117 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 CLEC2LP0C7M8 214 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 SMIM18P0DKX4 95 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 SLC2A2P11168 524 aaPredicted RBP9.5□□□□□ -0.89
CUX1-207ENST00000465461 ARSBP15848 533 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 RAB3BP20337 219 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 SAA4P35542 130 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 GLP1RP43220 463 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 UBE2E1P51965 193 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 RPS27AP62979 156 aaKnown RBP9.5□□□□□ -0.89
CUX1-207ENST00000465461 GUCA2AQ02747 115 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 MXD1Q05195 221 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 SLC9A3R2Q15599 337 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 C17orf58Q2M2W7 97 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 C2orf76Q3KRA6 126 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 KRTAP21-3Q3LHN1 58 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 NCR3LG1Q68D85 454 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 C5orf24Q7Z6I8 188 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 LHFPL4Q7Z7J7 247 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 LINC00596Q86U02 117 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.5□□□□□ -0.89
CUX1-207ENST00000465461 RFESDQ8TAC1 157 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 CORO2AQ92828 525 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 MRPS24Q96EL2 167 aaKnown RBP9.5□□□□□ -0.89
CUX1-207ENST00000465461 AJUBAQ96IF1 538 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 CENPOQ9BU64 300 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms