RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RNF115Q9Y4L5 304 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 A0A0U1RQK1 487 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 YIF1AO95070 293 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 SLC6A1P30531 599 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 FGF12P61328 243 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 MRPS11P82912 194 aaKnown RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 COL10A1Q03692 680 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 PLA2G2CQ5R387 149 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 TIMM23BQ5SRD1 257 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 C9orf106Q8NAJ2 232 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 UBAC2Q8NBM4 344 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 TMEM104Q8NE00 496 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ASB13Q8WXK3 278 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ZNF837Q96EG3 531 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 PARP12Q9H0J9 701 aaKnown RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CLN8Q9UBY8 286 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 AMMECR1Q9Y4X0 333 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 DHRS7CA6NNS2 312 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 ADH4P08319 380 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 COX6B1P14854 86 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 HLA-DRB3P79483 266 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 SNTB1Q13884 538 aaKnown RBP6.4□□□□□ -1.38
SYNE1-213ENST00000448038 ZNF79Q15937 498 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 PXT1Q8NFP0 134 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 ATPIF1Q9UII2 106 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 COL6A6A6NMZ7 2263 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 CEACAM3P40198 252 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 PEAR1Q5VY43 1037 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-213ENST00000448038 UNQ9370/PRO34162Q6UXP9 181 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 UHRF2Q96PU4 802 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 RAB18Q9NP72 206 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 RASL12Q9NYN1 266 aa6.4□□□□□ -1.38
SYNE1-213ENST00000448038 A8MXE2 369 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 SYNGR1O43759 233 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 DUS4LO95620 317 aaKnown RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 PPYP01298 95 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 CTSDP07339 412 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 PPT1P50897 306 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 SRSF6Q13247 344 aaKnown RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 IL13RA2Q14627 380 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 NSUN5P2Q63ZY6 315 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 TMEM182Q6ZP80 229 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 LINC01560Q8TB33 94 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 SCARB1Q8WTV0 552 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 SFT2D1Q8WV19 159 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 CORO2AQ92828 525 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 RNF122Q9H9V4 155 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 CA10Q9NS85 328 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 SERTAD4Q9NUC0 356 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 SLC25A10Q9UBX3 287 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF107Q9UII5 783 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 ZDHHC8Q9ULC8 765 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 PLXNA2O75051 1894 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 HELZP42694 1942 aaKnown RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 MST1P26927 711 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 GPR6P46095 362 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 GZMKP49863 264 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 C1orf100Q5SVJ3 147 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 ABLIM2Q6H8Q1 611 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 KCNRGQ8N5I3 272 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 SPICQ8N5J4 248 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 DUSP18Q8NEJ0 188 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 ADGRG7Q96K78 797 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 LPAR5Q9H1C0 372 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 ARV1Q9H2C2 271 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 RPS10P5Q9NQ39 176 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 GYPAP02724 150 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 NAT2P11245 290 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 PRF1P14222 555 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 NAAAQ02083 359 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 TESK1Q15569 626 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 ZNF529Q6P280 563 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 TMED6Q8WW62 240 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 GNPNAT1Q96EK6 184 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-213ENST00000448038 CCL13Q99616 98 aa6.4□□□□□ -1.39
SYNE1-213ENST00000448038 ICE1Q9Y2F5 2266 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 RTTNQ86VV8 2226 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 C2orf16Q68DN1 1984 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 RAB4BP61018 213 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 RPL31P62899 125 aaKnown RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 SURF2Q15527 256 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 UBE2V2Q15819 145 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 NXF2Q9GZY0 626 aaKnown RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 SPRR3Q9UBC9 169 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 LANCL1O43813 399 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 CST7O76096 145 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 KIR2DS2P43631 304 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 KLF9Q13886 244 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 PHYHD1Q5SRE7 291 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 GGNBP1Q5YKI7 109 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 TBC1D26Q86UD7 250 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 TPRX1Q8N7U7 411 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 ADTRPQ96IZ2 230 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 KIF26AQ9ULI4 1882 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-213ENST00000448038 SYNGR3O43761 229 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 EFNA2O43921 213 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 IGHV1-2P23083 117 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 ASCL1P50553 236 aa6.39□□□□□ -1.39
SYNE1-213ENST00000448038 KCNMB1Q16558 191 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms