RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 C1orf147Q96MC9 270 aaPredicted RBP15.24■□□□□ 0.03
SHH-203ENST00000435425 DPCDQ9BVM2 203 aaPredicted RBP15.24■□□□□ 0.03
SHH-203ENST00000435425 NDUFB11Q9NX14 153 aa15.24■□□□□ 0.03
SHH-203ENST00000435425 FBN1P35555 2871 aaKnown RBP15.24■□□□□ 0.03
SHH-203ENST00000435425 ODAMA1E959 279 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 CSN2P05814 226 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 MGMTP16455 207 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 SAA4P35542 130 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 SLC9A3R2Q15599 337 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 NEDD8Q15843 81 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 MPV17LQ2QL34 196 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 KCTD21Q4G0X4 260 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 C1orf100Q5SVJ3 147 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 Q6YL49 198 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 LINC00596Q86U02 117 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 PLPPR1Q8TBJ4 325 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 GFI1Q99684 422 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 BARHL1Q9BZE3 327 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 KCNK15Q9H427 330 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 PLGRKTQ9HBL7 147 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 KIF25Q9UIL4 384 aa15.23■□□□□ 0.03
SHH-203ENST00000435425 UBE2J1Q9Y385 318 aaPredicted RBP15.23■□□□□ 0.03
SHH-203ENST00000435425 MEIKINA0A087WXM9 373 aa15.22■□□□□ 0.03
SHH-203ENST00000435425 MPIG6BO95866 241 aa15.22■□□□□ 0.03
SHH-203ENST00000435425 IGHV1-8P0DP01 117 aa15.22■□□□□ 0.03
SHH-203ENST00000435425 HTR2CP28335 458 aa15.22■□□□□ 0.03
SHH-203ENST00000435425 P2RY14Q15391 338 aa15.22■□□□□ 0.03
SHH-203ENST00000435425 OR10K2Q6IF99 312 aa15.22■□□□□ 0.03
SHH-203ENST00000435425 GHRLQ9UBU3 117 aa15.22■□□□□ 0.03
SHH-203ENST00000435425 TRAV39A0A0B4J263 110 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 MMP23AO75900 390 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 PAHP00439 452 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 MELTFP08582 738 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 GLP1RP43220 463 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 LGALS4P56470 323 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 ACTG1P63261 375 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 DYNC1I2Q13409 638 aaKnown RBP15.21■□□□□ 0.03
SHH-203ENST00000435425 PRAMEF5Q5TYX0 476 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 C22orf42Q6IC83 251 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 OR13D1Q8NGV5 346 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 FAM216AQ8WUB2 273 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 C17orf50Q8WW18 174 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 CORO2AQ92828 525 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 MRPS24Q96EL2 167 aaKnown RBP15.21■□□□□ 0.03
SHH-203ENST00000435425 CST11Q9H112 138 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 GAL3ST2Q9H3Q3 398 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 IFT22Q9H7X7 185 aa15.21■□□□□ 0.03
SHH-203ENST00000435425 TRDV1A0A1B0GX56 115 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 FAM172BPA6NC97 362 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 SLC22A1O15245 554 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 CLPXO76031 633 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 RBP4P02753 201 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 ARG1P05089 322 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 FBP1P09467 338 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 UBBP0CG47 229 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 VSIG8P0DPA2 414 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 OMGP23515 440 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 RSBN1Q5VWQ0 802 aaPredicted RBP15.2■□□□□ 0.02
SHH-203ENST00000435425 BAIAP2L2Q6UXY1 529 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 OR6M1Q8NGM8 313 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 OR13A1Q8NGR1 328 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 ZFAND2BQ8WV99 257 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 SLC25A28Q96A46 364 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 PRDM13Q9H4Q3 707 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 TAS2R3Q9NYW6 316 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 OR6C3Q9NZP0 311 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 PEX16Q9Y5Y5 336 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 SESN1Q9Y6P5 492 aa15.2■□□□□ 0.02
SHH-203ENST00000435425 MCRIP1C9JLW8 97 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 IGHV4-59P01825 116 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 MYL9P24844 172 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 CDK2P24941 298 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 PAX6P26367 422 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 GDNFP39905 211 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 KCNJ3P48549 501 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 CLDN12P56749 244 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 RAB11BQ15907 218 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 MIDNQ504T8 468 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 RAB12Q6IQ22 244 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 CD200R1LQ6Q8B3 271 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 MRGPRDQ8TDS7 321 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 CCDC107Q8WV48 283 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 Q96M66 194 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 V9GY05 133 aa15.19■□□□□ 0.02
SHH-203ENST00000435425 ATRQ13535 2644 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 SHISA3A0PJX4 238 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 ZNF729A6NN14 1252 aaPredicted RBP15.18■□□□□ 0.02
SHH-203ENST00000435425 SLC17A2O00624 439 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 PDCD5O14737 125 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 TNFAIP8O95379 198 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 CD37P11049 281 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 LTC4SQ16873 150 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 C17orf58Q2M2W7 97 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 HES5Q5TA89 166 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 SLC35E4Q6ICL7 350 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 LHFPL4Q7Z7J7 247 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 ZNF565Q8N9K5 539 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 TSPAN14Q8NG11 270 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 KCNG3Q8TAE7 436 aa15.18■□□□□ 0.02
SHH-203ENST00000435425 CYYR1Q96J86 154 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms