RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 CCNOP22674 350 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 ATP6V0CP27449 155 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 P2RY1P47900 373 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 UCP2P55851 309 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 EIF2S3LQ2VIR3 472 aaKnown RBP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 ABCA11PQ4W5N1 156 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 FAM27BQ5VT28 67 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 GFI1BQ5VTD9 330 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 TMEM42Q69YG0 159 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF611Q8N823 705 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 BCL2L14Q9BZR8 327 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 METTL9Q9H1A3 318 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 VSIRQ9H7M9 311 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 URGCP-MRPS24S4R325 110 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 ATMQ13315 3056 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 NSG1A0A0A6YYJ2 146 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 ADAM20O43506 726 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 SYNGR1O43759 233 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 JTBO76095 146 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 PPYP01298 95 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 IGHV2-5P01817 119 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 PRH1P02810 166 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 TFF1P04155 84 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 SELEP16581 610 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 RBM11P57052 281 aaKnown RBP6.15□□□□□ -1.42
COL28A1-202ENST00000430711 MRPS34P82930 218 aaKnown RBP6.15□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF154Q13106 437 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 SURF2Q15527 256 aaPredicted RBP6.15□□□□□ -1.42
COL28A1-202ENST00000430711 SWI5Q1ZZU3 235 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 PLCXD3Q63HM9 321 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 OPN5Q6U736 354 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 SETXQ7Z333 2677 aaKnown RBP6.15□□□□□ -1.42
COL28A1-202ENST00000430711 P4HA3Q7Z4N8 544 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 TBC1D26Q86UD7 250 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 CARFQ8N187 725 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 OSR2Q8N2R0 312 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 IFI44Q8TCB0 444 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 MOB3AQ96BX8 217 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 BORCS8Q96FH0 119 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 SSX3Q99909 188 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 IFT22Q9H7X7 185 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 CCL28Q9NRJ3 127 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 SMCO4Q9NRQ5 59 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 NECAP2Q9NVZ3 263 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 LIPGQ9Y5X9 500 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF292O60281 2723 aa6.15□□□□□ -1.42
COL28A1-202ENST00000430711 LOC102723996A0A087X1L8 192 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 TRAV20A0A0B4J274 112 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 A0A1W2PR80 420 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 UBE2CO00762 179 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 HSD17B6O14756 317 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 HLA-HP01893 362 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 MMP7P09237 267 aaPredicted RBP6.15□□□□□ -1.43
COL28A1-202ENST00000430711 PET100P0DJ07 73 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 RAB5AP20339 215 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 RBP2P50120 134 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 PAX9P55771 341 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 ERVFRD-1P60508 538 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 RAB35Q15286 201 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 KRTAP27-1Q3LI81 207 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 ASCL4Q6XD76 172 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 Q6ZRM9 215 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 GAPTQ8N292 157 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 OR10D3Q8NH80 312 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 GALNT14Q96FL9 552 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 SIGLEC12Q96PQ1 595 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 OR2H1Q9GZK4 316 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 ZNF552Q9H707 407 aaPredicted RBP6.15□□□□□ -1.43
COL28A1-202ENST00000430711 CALHM2Q9HA72 323 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 NIT2Q9NQR4 276 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 CSMD1Q96PZ7 3565 aa6.15□□□□□ -1.43
COL28A1-202ENST00000430711 MGAQ8IWI9 3026 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 DOCK11Q5JSL3 2073 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 TGIF2-C20orf24A0A0A6YYL0 155 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 C3orf85A0A1B0GTC6 90 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 E5RGE8 158 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 TAAR5O14804 337 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 GPR137BO60478 399 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 NDUFS6O75380 124 aaKnown RBP6.14□□□□□ -1.43
COL28A1-202ENST00000430711 IFNA21P01568 189 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 FOLR2P14207 255 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 EIF1P41567 113 aaKnown RBP6.14□□□□□ -1.43
COL28A1-202ENST00000430711 GPM6AP51674 278 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 DYNLT3P51808 116 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 DSCR4P56555 118 aaPredicted RBP6.14□□□□□ -1.43
COL28A1-202ENST00000430711 SRYQ05066 204 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 ARL16Q0P5N6 197 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 LPAL2Q16609 132 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 FAM209BQ5JX69 171 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 SP5Q6BEB4 398 aaPredicted RBP6.14□□□□□ -1.43
COL28A1-202ENST00000430711 SPNS3Q6ZMD2 512 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 GPR137CQ8N3F9 429 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 C15orf54Q8N8G6 183 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 OR56B2PQ8NGI1 322 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 OR14L1PQ8NHC6 308 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 SPTSSAQ969W0 71 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 ADGRG7Q96K78 797 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 SCGB3A2Q96PL1 93 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 FOXB1Q99853 325 aa6.14□□□□□ -1.43
COL28A1-202ENST00000430711 RGCCQ9H4X1 137 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms