RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 PLPP3O14495 311 aa12.79□□□□□ -0.36
PTPRU-204ENST00000428026 ZNF207O43670 478 aaKnown RBP12.79□□□□□ -0.36
PTPRU-204ENST00000428026 FAM74A3Q4VXF1 159 aa12.79□□□□□ -0.36
PTPRU-204ENST00000428026 RNF24Q9Y225 148 aa12.79□□□□□ -0.36
PTPRU-204ENST00000428026 M0QZ24 198 aa12.79□□□□□ -0.36
PTPRU-204ENST00000428026 RPL7P18124 248 aaKnown RBP12.79□□□□□ -0.36
PTPRU-204ENST00000428026 ACAA2P42765 397 aaKnown RBP12.79□□□□□ -0.36
PTPRU-204ENST00000428026 MESTQ5EB52 335 aa12.79□□□□□ -0.36
PTPRU-204ENST00000428026 PABPC1L2AQ5JQF8 200 aa12.79□□□□□ -0.36
PTPRU-204ENST00000428026 MRGPRDQ8TDS7 321 aa12.79□□□□□ -0.36
PTPRU-204ENST00000428026 GPBAR1Q8TDU6 330 aa12.79□□□□□ -0.36
PTPRU-204ENST00000428026 OR2M5A3KFT3 312 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 ORM2P19652 201 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 OR10J1P30954 320 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 OR3A1P47881 315 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 TCTAP57738 103 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 MICBQ29980 383 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 DCAF12L2Q5VW00 463 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 LYZL2Q7Z4W2 148 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 RPS4Y2Q8TD47 263 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 UBE2V2Q15819 145 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 DEGS2Q6QHC5 323 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 RNF2Q99496 336 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 FLRT3Q9NZU0 649 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 TNFSF14O43557 240 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 SYNGR2O43760 224 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 EWSR1Q01844 656 aaKnown RBP eCLIP12.78□□□□□ -0.36
PTPRU-204ENST00000428026 VMA21Q3ZAQ7 101 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 ANAPC16Q96DE5 110 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 FAM117AQ9C073 453 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 P4HTMQ9NXG6 502 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 COL11A1P12107 1806 aaPredicted RBP12.78□□□□□ -0.36
PTPRU-204ENST00000428026 C1QCP02747 245 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 PRSS1P07477 247 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 Q56UQ5 140 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 HES7Q9BYE0 225 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 SPAARA0A1B0GVQ0 90 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 PAGE4O60829 102 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 IER3P46695 156 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 OR4F17Q8NGA8 305 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 SSMEM1Q8WWF3 244 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 RHOVQ96L33 236 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 TMEM56Q96MV1 263 aa12.78□□□□□ -0.36
PTPRU-204ENST00000428026 M0QZK8 103 aa12.77□□□□□ -0.36
PTPRU-204ENST00000428026 GGCTO75223 188 aaKnown RBP12.77□□□□□ -0.36
PTPRU-204ENST00000428026 RNF224P0DH78 156 aa12.77□□□□□ -0.36
PTPRU-204ENST00000428026 SULT1A2P50226 295 aa12.77□□□□□ -0.36
PTPRU-204ENST00000428026 UBE2L3P68036 154 aaKnown RBP12.77□□□□□ -0.36
PTPRU-204ENST00000428026 NPEPL1Q8NDH3 523 aa12.77□□□□□ -0.36
PTPRU-204ENST00000428026 TMEM191AQ9H0A3 160 aa12.77□□□□□ -0.36
PTPRU-204ENST00000428026 ZNF552Q9H707 407 aaPredicted RBP12.77□□□□□ -0.36
PTPRU-204ENST00000428026 SERTM1A2A2V5 107 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 MMP9P14780 707 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 SUCLG1P53597 346 aaKnown RBP12.77□□□□□ -0.37
PTPRU-204ENST00000428026 TBX15Q96SF7 602 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 VAX2Q9UIW0 290 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 NAGKQ9UJ70 344 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 EIF3IQ13347 325 aaKnown RBP12.77□□□□□ -0.37
PTPRU-204ENST00000428026 GAPTQ8N292 157 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 HSD17B10Q99714 261 aaKnown RBP12.77□□□□□ -0.37
PTPRU-204ENST00000428026 MANBALQ9NQG1 85 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 VSIG4Q9Y279 399 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 ANKRD34CP0C6C1 535 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 MUC1P15941 1255 aaPredicted RBP12.77□□□□□ -0.37
PTPRU-204ENST00000428026 FZD5Q13467 585 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 ZNF273Q14593 569 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 LBHQ53QV2 105 aaPredicted RBP12.77□□□□□ -0.37
PTPRU-204ENST00000428026 NSUN5P2Q63ZY6 315 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 TMEM251Q8N6I4 163 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 OR2A5Q96R48 311 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 SLC7A10Q9NS82 523 aa12.77□□□□□ -0.37
PTPRU-204ENST00000428026 A0A1W2PQF6 199 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 NKX2-6A6NCS4 301 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 FBLL1A6NHQ2 334 aaKnown RBP12.76□□□□□ -0.37
PTPRU-204ENST00000428026 F5H697 171 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 WDR34Q96EX3 536 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 TNFSF18Q9UNG2 199 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 NMBP08949 121 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 RPS4Y1P22090 263 aaKnown RBP12.76□□□□□ -0.37
PTPRU-204ENST00000428026 MGAT2Q10469 447 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 VN1R4Q7Z5H5 301 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 GPA33Q99795 319 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 SH2D2AQ9NP31 389 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 PLA2G3Q9NZ20 509 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 PITPNC1Q9UKF7 332 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 TRBV5-3A0A0A0MS03 114 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 RAB29O14966 203 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 FGF2P09038 288 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 IFITM2Q01629 132 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 Q8IYB0 196 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 OR4P4Q8NGL7 312 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 OR1L3Q8NH93 324 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 PARP11Q9NR21 331 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 STARD10Q9Y365 291 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 TRBV23-1A0A0A0MS06 115 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 ST8SIA5O15466 376 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 MBPP02686 304 aaPredicted RBP12.76□□□□□ -0.37
PTPRU-204ENST00000428026 SP1P08047 785 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 RAB7AP51149 207 aa12.76□□□□□ -0.37
PTPRU-204ENST00000428026 PPP1CAP62136 330 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms