RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MIDNQ504T8 468 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 COL13A1Q5TAT6 717 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF66Q6ZN08 573 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 R3HDM4Q96D70 268 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 MBTPS2O43462 519 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 EML2O95834 649 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 DAOP14920 347 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 PI3P19957 117 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 G6PCP35575 357 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 SSX1Q16384 188 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF683Q8IZ20 524 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 GSX2Q9BZM3 304 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 HLA-GP17693 338 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM78Q5T7P6 136 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 FAM109BQ6ICB4 259 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-204ENST00000423058 GBGT1Q8N5D6 347 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR2Y1Q8NGV0 311 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 PIK3IP1Q96FE7 263 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 PLPPR2Q96GM1 343 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR4C12Q96R67 309 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF735P0CB33 412 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 COTL1Q14019 142 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 COL9A3Q14050 684 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-204ENST00000423058 FAM106AQ4KMX7 169 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 Q6ZNB5 142 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 ZBTB34Q8NCN2 500 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR52B4Q8NGK2 314 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR10G4Q8NGN3 311 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR10G9Q8NGN4 311 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR10G7Q8NGN6 311 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR5C1Q8NGR4 320 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 RAB37Q96AX2 223 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM191AQ9H0A3 160 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CST2P09228 141 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 PGA4P0DJD7 388 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 PGA5P0DJD9 388 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CDX1P47902 265 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 C11orf87Q6NUJ2 197 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 KIRREL2Q6UWL6 708 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 PDFQ9HBH1 243 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 PARP11Q9NR21 331 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 TBX21Q9UL17 535 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 DUXBA0A1W2PPF3 345 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CST4P01036 141 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 RNASE1P07998 156 aaKnown RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 HIST1H1DP16402 221 aaKnown RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 COMPP49747 757 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 METAP1P53582 386 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 DGCR2P98153 550 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 C11orf91Q3C1V1 193 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 FGF20Q9NP95 211 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 DOCK11Q5JSL3 2073 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV1OR21-1A0A087WYE8 117 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV1OR15-9A0A0B4J2B8 117 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 J3KRW8 73 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 NQO2P16083 231 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 SLC6A1P30531 599 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CAMPP49913 170 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 GABRA6Q16445 453 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 WDR25Q64LD2 544 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 NTN4Q9HB63 628 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 IL21Q9HBE4 155 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 DOPEY2Q9Y3R5 2298 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CXorf1O96002 111 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 PRSS2P07478 247 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 EVX1P49640 407 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 LSM6P62312 80 aaKnown RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 SNRPD3P62318 126 aaKnown RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 LGALSLQ3ZCW2 172 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 MOGAT3Q86VF5 341 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 RFESDQ8TAC1 157 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CDX2Q99626 313 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV5-51A0A0C4DH38 117 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 DHRS7CA6NNS2 312 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 RAB29O14966 203 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF383Q8NA42 475 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 ARHGAP5-AS1Q96IT6 56 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 SLC35B3Q9H1N7 401 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 A0A1B0GU03 582 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 OR2A4O95047 310 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 NAT2P11245 290 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 PNRC1Q12796 327 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 LRRC75BQ2VPJ9 315 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 PRSS36Q5K4E3 855 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 RNFT1Q5M7Z0 435 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 TOMM20LQ6UXN7 152 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 DTD1Q8TEA8 209 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 LOXL4Q96JB6 756 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 OR2A7Q96R45 310 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 HIGD1AQ9Y241 93 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 K7N7A8 449 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 PLPP3O14495 311 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 GHRHP01286 108 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 GABRB1P18505 474 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CEBPDP49716 269 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CLDN20P56880 219 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 CXorf66Q5JRM2 361 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-204ENST00000423058 EID2BQ96D98 161 aa6.07□□□□□ -1.44
SCN1A-204ENST00000423058 RAB33BQ9H082 229 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms