RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ARF6P62330 175 aa18.26■□□□□ 0.51
SHMT1-203ENST00000354098 NKAPLQ5M9Q1 402 aa18.26■□□□□ 0.51
SHMT1-203ENST00000354098 C1orf229Q6ZS94 237 aaPredicted RBP18.26■□□□□ 0.51
SHMT1-203ENST00000354098 H3BMQ9 156 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 PDCD6O75340 191 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 BLVRBP30043 206 aaPredicted RBP18.25■□□□□ 0.51
SHMT1-203ENST00000354098 P2RX3P56373 397 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 ZNF273Q14593 569 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 KRBOX4Q5JUW0 171 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 TCF23Q7RTU1 214 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 CROCCP3Q8IVE0 287 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 POM121Q96HA1 1249 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 RBM38Q9H0Z9 239 aaKnown RBP18.25■□□□□ 0.51
SHMT1-203ENST00000354098 SPACA1Q9HBV2 294 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 OPN4Q9UHM6 478 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 LIPFP07098 398 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 RAB6AP20340 208 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 CHATP28329 748 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 ERP29P30040 261 aaKnown RBP18.25■□□□□ 0.51
SHMT1-203ENST00000354098 TMEM50BP56557 158 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 MOGAT2Q3SYC2 334 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 C6orf201Q7Z4U5 140 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 NEK7Q8TDX7 302 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 DYRK2Q92630 601 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 BCL7BQ9BQE9 202 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 ONECUT1Q9UBC0 465 aa18.25■□□□□ 0.51
SHMT1-203ENST00000354098 UBE2QL1A1L167 161 aa18.24■□□□□ 0.51
SHMT1-203ENST00000354098 FOXI3A8MTJ6 420 aaPredicted RBP18.24■□□□□ 0.51
SHMT1-203ENST00000354098 MCRIP1C9JLW8 97 aa18.24■□□□□ 0.51
SHMT1-203ENST00000354098 RSBN1Q5VWQ0 802 aaPredicted RBP18.24■□□□□ 0.51
SHMT1-203ENST00000354098 IL17RELQ6ZVW7 336 aa18.24■□□□□ 0.51
SHMT1-203ENST00000354098 PTX4Q96A99 478 aa18.24■□□□□ 0.51
SHMT1-203ENST00000354098 NEDD4LQ96PU5 975 aa18.24■□□□□ 0.51
SHMT1-203ENST00000354098 SULT4A1Q9BR01 284 aa18.24■□□□□ 0.51
SHMT1-203ENST00000354098 AUP1Q9Y679 476 aa18.24■□□□□ 0.51
SHMT1-203ENST00000354098 WNK2Q9Y3S1 2297 aa18.24■□□□□ 0.51
SHMT1-203ENST00000354098 CCDC160A6NGH7 325 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 INAFM1C9JVW0 142 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 J3QLI3 93 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 CCL3L1P16619 93 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 RORCP51449 518 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 FAM120AOSQ5T036 256 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 FAAP24Q9BTP7 215 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 MRI1Q9BV20 369 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 ATG5Q9H1Y0 275 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 ABRACLQ9P1F3 81 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 KIF25Q9UIL4 384 aa18.23■□□□□ 0.51
SHMT1-203ENST00000354098 ODAMA1E959 279 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 NOL3O60936 208 aaKnown RBP18.22■□□□□ 0.51
SHMT1-203ENST00000354098 KCNJ3P48549 501 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 ERVFRD-1P60508 538 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 MEF2CQ06413 473 aaPredicted RBP18.22■□□□□ 0.51
SHMT1-203ENST00000354098 Q8N7P7 452 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 OR56B1Q8NGI3 324 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 SIRPDQ9H106 197 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 hADV38S2A0JD32 116 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 RAB27BO00194 218 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 MMP9P14780 707 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 DLX1P56177 255 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 RBM39Q14498 530 aaKnown RBP18.22■□□□□ 0.51
SHMT1-203ENST00000354098 PLAC9Q5JTB6 97 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 SLC25A38Q96DW6 304 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 ARHGAP5-AS1Q96IT6 56 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 DMRTB1Q96MA1 342 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 WDFY2Q96P53 400 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 PCGF1Q9BSM1 259 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 PLEKHJ1Q9NW61 149 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 ETAA1Q9NY74 926 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 SPATA2Q9UM82 520 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 ETV7Q9Y603 341 aa18.22■□□□□ 0.51
SHMT1-203ENST00000354098 SONP18583 2426 aaKnown RBP18.21■□□□□ 0.51
SHMT1-203ENST00000354098 MTORP42345 2549 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 HIVEP2P31629 2446 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 MEIKINA0A087WXM9 373 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 TRAV39A0A0B4J263 110 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 FUOMA2VDF0 154 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 TMEM127O75204 238 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 SCAND1P57086 179 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 PAX5Q02548 391 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 PRB3Q04118 309 aaPredicted RBP18.21■□□□□ 0.51
SHMT1-203ENST00000354098 C11orf42Q8N5U0 333 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 RHBDL2Q9NX52 303 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 LINC00312Q9Y6C7 94 aa18.21■□□□□ 0.51
SHMT1-203ENST00000354098 METTL21EPA6NDL7 271 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 H3BUI4 141 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 TOX4O94842 621 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 GLAP06280 429 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 DLX6P56179 175 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 METTL11BQ5VVY1 283 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 OLFML2AQ68BL7 652 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 SLC35E4Q6ICL7 350 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 ZNF497Q6ZNH5 498 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 Q6ZTK2 550 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 TRAPPC6BQ86SZ2 158 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 OR10R2Q8NGX6 335 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 TBX15Q96SF7 602 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 PECRQ9BY49 303 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 TMEM160Q9NX00 188 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 KPTNQ9Y664 436 aa18.2■□□□□ 0.5
SHMT1-203ENST00000354098 DPPA5A6NC42 116 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms