RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LANCL2Q9NS86 450 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 ARL2-SNX15V9GYD0 113 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 KIAA1324LA8MWY0 1029 aaPredicted RBP13.48□□□□□ -0.25
SHH-201ENST00000297261 CXCL13O43927 109 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 ZNF816Q0VGE8 651 aaPredicted RBP13.48□□□□□ -0.25
SHH-201ENST00000297261 ABHD5Q8WTS1 349 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 ELOVL1Q9BW60 279 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 SIRT7Q9NRC8 400 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 PAM16Q9Y3D7 125 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 MEX3AA1L020 520 aaKnown RBP13.48□□□□□ -0.25
SHH-201ENST00000297261 C5orf49A4QMS7 147 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 RNF222A6NCQ9 220 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 M0R296 226 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 CLN5O75503 358 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 CD8AP01732 235 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 PATE4P0C8F1 98 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 CDX1P47902 265 aaPredicted RBP13.48□□□□□ -0.25
SHH-201ENST00000297261 COTL1Q14019 142 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 FHL5Q5TD97 284 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 LINC00696Q6ZRV3 163 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 TPPP3Q9BW30 176 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 LIN7CQ9NUP9 197 aaKnown RBP13.48□□□□□ -0.25
SHH-201ENST00000297261 TREM2Q9NZC2 230 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 METTL1Q9UBP6 276 aaKnown RBP13.48□□□□□ -0.25
SHH-201ENST00000297261 NCOR1O75376 2440 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 OR7C2O60412 319 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 ERVFC1-1P60608 527 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 TMEM183BQ1AE95 376 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 EIF4E3Q8N5X7 224 aaKnown RBP13.47□□□□□ -0.25
SHH-201ENST00000297261 ADAMTS17Q8TE56 1095 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 TRAV14DV4A0A0A6YYC5 116 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 ZIC2O95409 532 aaPredicted RBP13.47□□□□□ -0.25
SHH-201ENST00000297261 CD74P04233 296 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 GAPDHP04406 335 aaKnown RBP13.47□□□□□ -0.25
SHH-201ENST00000297261 SPINK2P20155 84 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 EDDM3BP56851 147 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 FFAR4Q5NUL3 377 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 RAB40CQ96S21 281 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 NAT8BQ9UHF3 227 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 KLF4O43474 513 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 PDCD6O75340 191 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 PGA4P0DJD7 388 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 PGA5P0DJD9 388 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 DTYMKP23919 212 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 FUT6P51993 359 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 ARG2P78540 354 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 SLC38A11Q08AI6 406 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 GAMTQ14353 236 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 OR10G3Q8NGC4 313 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 DYRK2Q92630 601 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 CTHRC1Q96CG8 243 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 TRBV5-7A0A0A0MS05 114 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 FAM157BP0CG42 384 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 LINC01590Q5TEZ4 76 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 DPPA3Q6W0C5 159 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 C9orf40Q8IXQ3 194 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 OR13G1Q8NGZ3 307 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 ZNRF4Q8WWF5 429 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 SPACA9Q96E40 222 aaPredicted RBP13.47□□□□□ -0.25
SHH-201ENST00000297261 TAAR9Q96RI9 348 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 Q9N2K0 584 aa13.47□□□□□ -0.25
SHH-201ENST00000297261 ZNF732B4DXR9 585 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 TTRP02766 147 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 GALNSP34059 522 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 RPS11P62280 158 aaKnown RBP eCLIP13.46□□□□□ -0.25
SHH-201ENST00000297261 TRA2AQ13595 282 aaKnown RBP eCLIP13.46□□□□□ -0.25
SHH-201ENST00000297261 ZNF343Q6P1L6 599 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 CNEP1R1Q8N9A8 125 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 OR5B3Q8NH48 314 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 PLPPR2Q96GM1 343 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 AQP10Q96PS8 301 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 SPSB2Q99619 263 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 RARRES2Q99969 163 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 CARHSP1Q9Y2V2 147 aaKnown RBP13.46□□□□□ -0.25
SHH-201ENST00000297261 FCN1O00602 326 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 AMTP48728 403 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 SRSF3P84103 164 aaKnown RBP13.46□□□□□ -0.25
SHH-201ENST00000297261 SCGB2A2Q13296 93 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 KIAA1456Q9P272 454 aa13.46□□□□□ -0.25
SHH-201ENST00000297261 KIAA1671Q9BY89 1806 aa13.46□□□□□ -0.26
SHH-201ENST00000297261 TGIF2-C20orf24A0A0A6YYL0 155 aa13.46□□□□□ -0.26
SHH-201ENST00000297261 SLC10A1Q14973 349 aa13.46□□□□□ -0.26
SHH-201ENST00000297261 CEACAM16Q2WEN9 425 aa13.46□□□□□ -0.26
SHH-201ENST00000297261 LPAR5Q9H1C0 372 aa13.46□□□□□ -0.26
SHH-201ENST00000297261 KCNIP2Q9NS61 270 aa13.46□□□□□ -0.26
SHH-201ENST00000297261 NAT8Q9UHE5 227 aa13.46□□□□□ -0.26
SHH-201ENST00000297261 MPPED1O15442 326 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 HKR1P10072 659 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 GPM6AP51674 278 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 IL24Q13007 206 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 TBC1D26Q86UD7 250 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 MYPOPQ86VE0 399 aaPredicted RBP13.45□□□□□ -0.26
SHH-201ENST00000297261 RNF133Q8WVZ7 376 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 C5orf66Q9H5L9 145 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 HDGFL3Q9Y3E1 203 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 VDAC1P21796 283 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 CYB561P49447 251 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 PRR27Q6MZM9 219 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 CMTM2Q8TAZ6 248 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 ZNF721Q8TF20 911 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms