RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 ANKRD44Q8N8A2 993 aa11.68□□□□□ -0.54
PHGDH-228ENST00000641847 CCDC136Q96JN2 1154 aa11.68□□□□□ -0.54
PHGDH-228ENST00000641847 ZC3H12CQ9C0D7 883 aaKnown RBP11.68□□□□□ -0.54
PHGDH-228ENST00000641847 DLL1O00548 723 aa11.67□□□□□ -0.54
PHGDH-228ENST00000641847 HCLS1P14317 486 aaPredicted RBP11.67□□□□□ -0.54
PHGDH-228ENST00000641847 FOXO4P98177 505 aa11.67□□□□□ -0.54
PHGDH-228ENST00000641847 RPAP2Q8IXW5 612 aaPredicted RBP11.67□□□□□ -0.54
PHGDH-228ENST00000641847 TMEM106CQ9BVX2 250 aa11.67□□□□□ -0.54
PHGDH-228ENST00000641847 PLA2G12BQ9BX93 195 aa11.67□□□□□ -0.54
PHGDH-228ENST00000641847 CFHR5Q9BXR6 569 aa11.67□□□□□ -0.54
PHGDH-228ENST00000641847 TRIM17Q9Y577 477 aa11.67□□□□□ -0.54
PHGDH-228ENST00000641847 PITPNM2Q9BZ72 1349 aa11.66□□□□□ -0.54
PHGDH-228ENST00000641847 UBE2Q2LH0YL09 131 aa11.66□□□□□ -0.54
PHGDH-228ENST00000641847 VIL1P09327 827 aaKnown RBP11.66□□□□□ -0.54
PHGDH-228ENST00000641847 HSP90B1P14625 803 aaKnown RBP11.66□□□□□ -0.54
PHGDH-228ENST00000641847 CTSWP56202 376 aa11.66□□□□□ -0.54
PHGDH-228ENST00000641847 ATP8B2P98198 1209 aa11.66□□□□□ -0.54
PHGDH-228ENST00000641847 MTX1Q13505 466 aa11.66□□□□□ -0.54
PHGDH-228ENST00000641847 HDAC1Q13547 482 aaPredicted RBP11.66□□□□□ -0.54
PHGDH-228ENST00000641847 DOK7Q18PE1 504 aa11.66□□□□□ -0.54
PHGDH-228ENST00000641847 RABL6Q3YEC7 729 aaPredicted RBP11.66□□□□□ -0.54
PHGDH-228ENST00000641847 SIRT2Q8IXJ6 389 aa11.66□□□□□ -0.54
PHGDH-228ENST00000641847 RANBP2P49792 3224 aaKnown RBP11.66□□□□□ -0.54
PHGDH-228ENST00000641847 PNMA6EA0A0J9YXQ4 647 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 POTEFA5A3E0 1075 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 SRGAP3O43295 1099 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 PDE8AO60658 829 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 HMMRO75330 724 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 INHBEP58166 350 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 MKRN3Q13064 507 aaKnown RBP11.65□□□□□ -0.54
PHGDH-228ENST00000641847 LMBR1LQ6UX01 489 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 SLC17A8Q8NDX2 589 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 AGBL3Q8NEM8 1001 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 RWDD1Q9H446 243 aaPredicted RBP11.65□□□□□ -0.54
PHGDH-228ENST00000641847 COLQQ9Y215 455 aaPredicted RBP11.65□□□□□ -0.54
PHGDH-228ENST00000641847 CHMP3Q9Y3E7 222 aa11.65□□□□□ -0.54
PHGDH-228ENST00000641847 COL6A3P12111 3177 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 IGHDP01880 384 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 USP17L8P0C7I0 530 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 ZNF280AP59817 542 aaPredicted RBP11.64□□□□□ -0.55
PHGDH-228ENST00000641847 POLA2Q14181 598 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 ARMC9Q7Z3E5 817 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 SSH3Q8TE77 659 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 ERO1AQ96HE7 468 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 CCDC85AQ96PX6 553 aaPredicted RBP11.64□□□□□ -0.55
PHGDH-228ENST00000641847 MYOZ2Q9NPC6 264 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 POLLQ9UGP5 575 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 PAPPA2Q9BXP8 1791 aa11.64□□□□□ -0.55
PHGDH-228ENST00000641847 ASTN2O75129 1339 aaPredicted RBP11.63□□□□□ -0.55
PHGDH-228ENST00000641847 ARHGEF6Q15052 776 aa11.63□□□□□ -0.55
PHGDH-228ENST00000641847 CCDC152Q4G0S7 254 aa11.63□□□□□ -0.55
PHGDH-228ENST00000641847 OTUD7BQ6GQQ9 843 aa11.63□□□□□ -0.55
PHGDH-228ENST00000641847 RSBN1LQ6PCB5 846 aaPredicted RBP11.63□□□□□ -0.55
PHGDH-228ENST00000641847 NBPF11Q86T75 865 aa11.63□□□□□ -0.55
PHGDH-228ENST00000641847 KCNQ5Q9NR82 932 aa11.63□□□□□ -0.55
PHGDH-228ENST00000641847 RTL9Q8NET4 1388 aa11.63□□□□□ -0.55
PHGDH-228ENST00000641847 SPEF2Q9C093 1822 aa11.63□□□□□ -0.55
PHGDH-228ENST00000641847 MANSC4A6NHS7 340 aaPredicted RBP11.62□□□□□ -0.55
PHGDH-228ENST00000641847 CSF1RP07333 972 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 EN2P19622 333 aaPredicted RBP11.62□□□□□ -0.55
PHGDH-228ENST00000641847 GPSM2P81274 684 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 MOB2Q70IA6 237 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 CENPQQ7L2Z9 268 aaPredicted RBP11.62□□□□□ -0.55
PHGDH-228ENST00000641847 OTOP1Q7RTM1 612 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 OGFOD1Q8N543 542 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 TTLL11Q8NHH1 800 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 TBC1D16Q8TBP0 767 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 GREM2Q9H772 168 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 ANKIB1Q9P2G1 1089 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 PTPN22Q9Y2R2 807 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 CUL9Q8IWT3 2517 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 CEP290O15078 2479 aa11.62□□□□□ -0.55
PHGDH-228ENST00000641847 TRIOBPQ9H2D6 2365 aa11.61□□□□□ -0.55
PHGDH-228ENST00000641847 ZBTB22O15209 634 aa11.61□□□□□ -0.55
PHGDH-228ENST00000641847 ITGA6P23229 1130 aa11.61□□□□□ -0.55
PHGDH-228ENST00000641847 RFX5P48382 616 aaPredicted RBP11.61□□□□□ -0.55
PHGDH-228ENST00000641847 IFIT5Q13325 482 aaKnown RBP11.61□□□□□ -0.55
PHGDH-228ENST00000641847 SF3B3Q15393 1217 aaKnown RBP11.61□□□□□ -0.55
PHGDH-228ENST00000641847 CCDC57Q2TAC2 916 aa11.61□□□□□ -0.55
PHGDH-228ENST00000641847 KLHDC4Q8TBB5 520 aa11.61□□□□□ -0.55
PHGDH-228ENST00000641847 ARMC5Q96C12 935 aa11.61□□□□□ -0.55
PHGDH-228ENST00000641847 EFCC1Q9HA90 598 aa11.61□□□□□ -0.55
PHGDH-228ENST00000641847 COL4A1P02462 1669 aa11.61□□□□□ -0.55
PHGDH-228ENST00000641847 POLR2AP24928 1970 aaKnown RBP11.61□□□□□ -0.55
PHGDH-228ENST00000641847 KIAA0100Q14667 2235 aaKnown RBP11.6□□□□□ -0.55
PHGDH-228ENST00000641847 ANKRD18BA2A2Z9 1011 aa11.6□□□□□ -0.55
PHGDH-228ENST00000641847 UFL1O94874 794 aa11.6□□□□□ -0.55
PHGDH-228ENST00000641847 SLC4A8Q2Y0W8 1093 aa11.6□□□□□ -0.55
PHGDH-228ENST00000641847 TAF7LQ5H9L4 462 aa11.6□□□□□ -0.55
PHGDH-228ENST00000641847 CELF1Q92879 486 aaKnown RBP11.6□□□□□ -0.55
PHGDH-228ENST00000641847 COPRSQ9NQ92 184 aa11.6□□□□□ -0.55
PHGDH-228ENST00000641847 GGA1Q9UJY5 639 aa11.6□□□□□ -0.55
PHGDH-228ENST00000641847 PA2G4Q9UQ80 394 aaKnown RBP11.6□□□□□ -0.55
PHGDH-228ENST00000641847 USP17L3A6NCW0 530 aa11.59□□□□□ -0.55
PHGDH-228ENST00000641847 USP17L4A6NCW7 530 aa11.59□□□□□ -0.55
PHGDH-228ENST00000641847 SURF6O75683 361 aaKnown RBP11.59□□□□□ -0.55
PHGDH-228ENST00000641847 MMP14P50281 582 aa11.59□□□□□ -0.55
PHGDH-228ENST00000641847 RPS8P62241 208 aaKnown RBP11.59□□□□□ -0.55
PHGDH-228ENST00000641847 PTPN12Q05209 780 aaKnown RBP11.59□□□□□ -0.55
PHGDH-228ENST00000641847 PRAMEF18Q5VWM3 479 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms