RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DDX21Q9NR30 783 aaKnown RBP eCLIP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 RPS6KA4O75676 772 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 PDE4DQ08499 809 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 EIF4A2Q14240 407 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 SLC15A2Q16348 729 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 CENPQQ7L2Z9 268 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 CCDC148Q8NFR7 591 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 GLG1Q92896 1179 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 TSG101Q99816 390 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 GLT8D2Q9H1C3 349 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 ZNHIT6Q9NWK9 470 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 PLEKHH1Q9ULM0 1364 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 RIMS1Q86UR5 1692 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 ALDH1L1O75891 902 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 MRPS9P82933 396 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 TMEM67Q5HYA8 995 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 LINS1Q8NG48 757 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 XDHP47989 1333 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 MYCLP12524 364 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 TBC1D10BQ4KMP7 808 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 CCDC155Q8N6L0 562 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 NAT10Q9H0A0 1025 aaKnown RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.76□□□□□ -1.493e-7■■■□□ 19
SCN1A-218ENST00000640036 SBNO1A3KN83 1393 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 TBCAO75347 108 aaKnown RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 ACTN1P12814 892 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 CEP57L1Q8IYX8 460 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 PALLDQ8WX93 1383 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 RRP36Q96EU6 259 aaKnown RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 CFAP57Q96MR6 1250 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 KDM5DQ9BY66 1539 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 ELF1P32519 619 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 RNASELQ05823 741 aaKnown RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 SASS6Q6UVJ0 657 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 FAM212AQ96EL1 285 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 LRRC27Q9C0I9 530 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 FAM50BQ9Y247 325 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 SHANK2Q9UPX8 1470 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 SLC1A4P43007 532 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 PIDD1Q9HB75 910 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 RRAGCQ9HB90 399 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 BSDC1Q9NW68 430 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 CD2APQ9Y5K6 639 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 KDM4FA0A1W2PPD8 638 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 CLRN2A0PK11 232 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 FLOT1O75955 427 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 ITGA6P23229 1130 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 MARCKSP29966 332 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 MCM2P49736 904 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 GOLGA1Q92805 767 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 SYNCQ9H7C4 482 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 MKRN1Q9UHC7 482 aaKnown RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 ARAP3Q8WWN8 1544 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 KINO60870 393 aaKnown RBP5.76□□□□□ -1.49
SCN1A-218ENST00000640036 CDC45O75419 566 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 USP8P40818 1118 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 AMPD3Q01432 767 aa5.76□□□□□ -1.49
SCN1A-218ENST00000640036 A0A0G2JLW4 131 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 GNAT1P11488 350 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 DBNDD1Q9H9R9 158 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 ADGRL3Q9HAR2 1447 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 ZCCHC11Q5TAX3 1644 aaKnown RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 SSRP1Q08945 709 aaKnown RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 RPS6KC1Q96S38 1066 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 HAUS2Q9NVX0 235 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 SAP30BPQ9UHR5 308 aaKnown RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 PUF60Q9UHX1 559 aaKnown RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 CSPG5O95196 566 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 SLC9C2Q5TAH2 1124 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 CWC27Q6UX04 472 aaKnown RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 RBM28Q9NW13 759 aaKnown RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 DACH1Q9UI36 760 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 ZHX1Q9UKY1 873 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 WTAPQ15007 396 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 MAP3K11Q16584 847 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 KCNG1Q9UIX4 513 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 CEP83Q9Y592 693 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 COL17A1Q9UMD9 1497 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 MAP4K4O95819 1239 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 ZSCAN20P17040 1043 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-218ENST00000640036 NLRX1Q86UT6 975 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 KIFC2Q96AC6 838 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 IFT74Q96LB3 600 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 KIF1BO60333 1816 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 C1orf115Q9H7X2 142 aa5.75□□□□□ -1.49
SCN1A-218ENST00000640036 EIF3DO15371 548 aaKnown RBP eCLIP5.74□□□□□ -1.493e-6■■□□□ 11.9
SCN1A-218ENST00000640036 ERLIN2O94905 339 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 SLC9C1Q4G0N8 1177 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 MAGEB6Q8N7X4 407 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 SOS1Q07889 1333 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-218ENST00000640036 ANKARQ7Z5J8 1434 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 ARHGEF37A1IGU5 675 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 TGFB2P61812 414 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 RABEP1Q15276 862 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 DEFB115Q30KQ5 88 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 SPATA24Q86W54 205 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 IGSF1Q8N6C5 1336 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 NAPAP54920 295 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 HSP90B2PQ58FF3 399 aa5.74□□□□□ -1.49
SCN1A-218ENST00000640036 KCNG4Q8TDN1 519 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms