RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 OPA1O60313 960 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 ZNF449Q6P9G9 518 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 SPAG5Q96R06 1193 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 STMN4Q9H169 189 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-217ENST00000637988 LRFN2Q9ULH4 789 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 NSD2O96028 1365 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 GADL1Q6ZQY3 521 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 CEP128Q6ZU80 1094 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 ZNF830Q96NB3 372 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC77Q9BR77 488 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC8Q9H0W5 538 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-217ENST00000637988 AGTPBP1Q9UPW5 1226 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 SATB1Q01826 763 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 PRPF40BQ6NWY9 871 aaKnown RBP6.93□□□□□ -1.3
SCN1A-217ENST00000637988 TRIM47Q96LD4 638 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 DNA2P51530 1060 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 CCNA1P78396 465 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC94Q9BW85 323 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-217ENST00000637988 EXOC6BQ9Y2D4 811 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 PPIP5K2O43314 1243 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 MRE11P49959 708 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 MICALCLQ6ZW33 695 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 CTAGE1Q96RT6 745 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 IRAK4Q9NWZ3 460 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 RASA3Q14644 834 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 ARMC9Q7Z3E5 817 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 PNMA2Q9UL42 364 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 TRPM2O94759 1503 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 DLGAP5Q15398 846 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 NCKAP5LQ9HCH0 1330 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 ZBTB43O43298 467 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 MAP3K7O43318 606 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 OSBPP22059 807 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 RPL13P26373 211 aaKnown RBP6.92□□□□□ -1.3
SCN1A-217ENST00000637988 ALDH3A1P30838 453 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 TPD52P55327 224 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-217ENST00000637988 CFAP157Q5JU67 520 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCN1A-217ENST00000637988 PARP10Q53GL7 1025 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 KRT79Q5XKE5 535 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 ZNF277Q9NRM2 450 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-217ENST00000637988 PDZRN3Q9UPQ7 1066 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 PLCB3Q01970 1234 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 FAM114A2Q9NRY5 505 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 NCOA1Q15788 1441 aa6.92□□□□□ -1.3
SCN1A-217ENST00000637988 ARHGEF10O15013 1369 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 PRKG1Q13976 671 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 SND1Q7KZF4 910 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 GIMAP7Q8NHV1 300 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 WDR66Q8TBY9 1149 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 CSRNP2Q9H175 543 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 DHX29Q7Z478 1369 aaKnown RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 BICDL2A1A5D9 508 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 PFDN6O15212 129 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 FAM98CQ17RN3 349 aaKnown RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 ERCC6LQ2NKX8 1250 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 TEX11Q8IYF3 940 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 USP16Q9Y5T5 823 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 KRT5P13647 590 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 ZNF526Q8TF50 670 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 EXOC4Q96A65 974 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 LMCD1Q9NZU5 365 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 USP25Q9UHP3 1055 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 SLC8A2Q9UPR5 921 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 ATF7P17544 494 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 CCT2P78371 535 aaKnown RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 MXRA7P84157 204 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 TTLL7Q6ZT98 887 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 AP5M1Q9H0R1 490 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 BIRC3Q13489 604 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 AKNAD1Q5T1N1 836 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 RBM25P49756 843 aaKnown RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 SKIV2LQ15477 1246 aaKnown RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 GNPTABQ3T906 1256 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 PRPF6O94906 941 aaKnown RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 MYCLP12524 364 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 IL15P40933 162 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-217ENST00000637988 MAP7Q14244 749 aa6.91□□□□□ -1.3
SCN1A-217ENST00000637988 ACEP12821 1306 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 GOLGA8CPA6NN73 597 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 POTEB2H3BUK9 544 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 TMOD1P28289 359 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 HOXD10P28358 340 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 KRT2P35908 639 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 ATP6V1E1P36543 226 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 FLIIQ13045 1269 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 AKAP4Q5JQC9 854 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 OTUD6AQ7L8S5 288 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 NME9Q86XW9 330 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 MAGEB6Q8N7X4 407 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 TRPC5Q9UL62 973 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-217ENST00000637988 ZNF518AQ6AHZ1 1483 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 YWHAEP62258 255 aaKnown RBP6.9□□□□□ -1.3
SCN1A-217ENST00000637988 DPP9Q86TI2 863 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 MBIPQ9NS73 344 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC169A6NNP5 214 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 IRS4O14654 1257 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-217ENST00000637988 POLR3GO15318 223 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-217ENST00000637988 ABCC5O15440 1437 aa6.9□□□□□ -1.3
SCN1A-217ENST00000637988 RRAGBQ5VZM2 374 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms