RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MAGI1Q96QZ7 1491 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-216ENST00000637968 F13A1P00488 732 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 GNAT1P11488 350 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 PLEKHO1Q53GL0 409 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-216ENST00000637968 IQCEQ6IPM2 695 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 OLFML1Q6UWY5 402 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 ATF7IPQ6VMQ6 1270 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 PLA2G4DQ86XP0 818 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 KAT2BQ92831 832 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 MPHOSPH6Q99547 160 aaKnown RBP6.5□□□□□ -1.37
SCN1A-216ENST00000637968 DACT1Q9NYF0 836 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 SASH3O75995 380 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 MYO1EQ12965 1108 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 SF3B2Q13435 895 aaKnown RBP6.5□□□□□ -1.37
SCN1A-216ENST00000637968 KLHL10Q6JEL2 608 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 TRIML1Q8N9V2 468 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 TEKT1Q969V4 418 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 JAKMIP1Q96N16 626 aaKnown RBP6.5□□□□□ -1.37
SCN1A-216ENST00000637968 MTRQ99707 1265 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 NOP53Q9NZM5 478 aaKnown RBP6.5□□□□□ -1.37
SCN1A-216ENST00000637968 ZDHHC9Q9Y397 364 aa6.5□□□□□ -1.37
SCN1A-216ENST00000637968 ERICH2A1L162 156 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 ATP6V1G1O75348 118 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 PYGBP11216 843 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 NLRP5P59047 1200 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 PLCB4Q15147 1175 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 AKNAD1Q5T1N1 836 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 BRAPQ7Z569 592 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 OGFOD1Q8N543 542 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 TRIM11Q96F44 468 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 FAM81BQ96LP2 452 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 TAOK3Q9H2K8 898 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 RTEL1-TNFRSF6BF6WH68 1400 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 ZNF644Q9H582 1327 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-216ENST00000637968 UHRF1BP1LA0JNW5 1464 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 HSF2BPO75031 334 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 TOP1P11387 765 aaKnown RBP6.49□□□□□ -1.37
SCN1A-216ENST00000637968 USP4Q13107 963 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 DRP2Q13474 957 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 APLFQ8IW19 511 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-216ENST00000637968 TMEM87AQ8NBN3 555 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 SYNJ1O43426 1573 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 H3BQV1 296 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 CEBPZQ03701 1054 aaKnown RBP6.49□□□□□ -1.37
SCN1A-216ENST00000637968 IFFO2Q5TF58 517 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 CWF19L1Q69YN2 538 aaKnown RBP6.49□□□□□ -1.37
SCN1A-216ENST00000637968 KIAA0586Q9BVV6 1533 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 MYL1P05976 194 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 PARP1P09874 1014 aaKnown RBP6.49□□□□□ -1.37
SCN1A-216ENST00000637968 CDC37Q16543 378 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-216ENST00000637968 PNMA8AQ86V59 439 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-216ENST00000637968 TRPC6Q9Y210 931 aa6.49□□□□□ -1.37
SCN1A-216ENST00000637968 NAIPQ13075 1403 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 DNAJC8O75937 253 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 FSBPO95073 299 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 IFT88Q13099 833 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 CUL4BQ13620 913 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 KCNV1Q6PIU1 500 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 SRGAP1Q7Z6B7 1085 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 JAKMIP2Q96AA8 810 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 ABCB6Q9NP58 842 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 FYCO1Q9BQS8 1478 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 GOLGA8KD6RF30 607 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 YY1P25490 414 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 DNM1Q05193 864 aaKnown RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 SAFB2Q14151 953 aaKnown RBP eCLIP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 CCDC144BQ3MJ40 725 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 CFAP100Q494V2 611 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 NAA16Q6N069 864 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 CCDC144CPQ8IYA2 1237 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 SMCR8Q8TEV9 937 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 SLC40A1Q9NP59 571 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 LUC7LQ9NQ29 371 aaKnown RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 CSB-PGBD3P0DP91 1061 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 XBP1P17861 261 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 GCLCP48506 637 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 SEPT7Q16181 437 aaKnown RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 KBTBD12Q3ZCT8 623 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 ARFGAP2Q8N6H7 521 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 NGDNQ8NEJ9 315 aaKnown RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 FBF1Q8TES7 1133 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 RUNDC1Q96C34 613 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 EPC1Q9H2F5 836 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 SPATA31E1Q6ZUB1 1445 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 CTTNBP2Q8WZ74 1663 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 DYTNA2CJ06 578 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 NEXNQ0ZGT2 675 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 PPP1R7Q15435 360 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 LARP1BQ659C4 914 aaKnown RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 DZIP3Q86Y13 1208 aaKnown RBP6.48□□□□□ -1.37
SCN1A-216ENST00000637968 CCDC155Q8N6L0 562 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 GORASP1Q9BQQ3 440 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 PCDHGA4Q9Y5G9 962 aa6.48□□□□□ -1.37
SCN1A-216ENST00000637968 CTAGE9A4FU28 777 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 FESP07332 822 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 VIL1P09327 827 aaKnown RBP6.47□□□□□ -1.37
SCN1A-216ENST00000637968 LACTBP83111 547 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-216ENST00000637968 G3BP1Q13283 466 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCN1A-216ENST00000637968 EHBP1Q8NDI1 1231 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 NSMCE1Q8WV22 266 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms