RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 KAZALD1Q96I82 304 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 ZSCAN16Q9H4T2 348 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 CHPF2Q9P2E5 772 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 KIAA1551Q9HCM1 1747 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 EIF4A1P60842 406 aaKnown RBP4.67□□□□□ -1.66
SCN1A-214ENST00000637038 SMAP1Q8IYB5 467 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-214ENST00000637038 IL17REQ8NFR9 667 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 ZSWIM6Q9HCJ5 1215 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 SPG7Q9UQ90 795 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 KIF2AO00139 706 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-214ENST00000637038 AP5Z1O43299 807 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 MMP14P50281 582 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 BEND3Q5T5X7 828 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 ATL3Q6DD88 541 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 SGIP1Q9BQI5 828 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 TRIM5Q9C035 493 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 RBM8AQ9Y5S9 174 aaKnown RBP4.67□□□□□ -1.66
SCN1A-214ENST00000637038 GADD45BO75293 160 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-214ENST00000637038 CREB3L3Q68CJ9 461 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 CCDC94Q9BW85 323 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-214ENST00000637038 MAP3K2Q9Y2U5 619 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 UTYO14607 1347 aa4.67□□□□□ -1.66
SCN1A-214ENST00000637038 GRM8O00222 908 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 KDM6AO15550 1401 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 KINO60870 393 aaKnown RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 PDE6BP35913 854 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 PRMT2P55345 433 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 MKRN4PQ13434 485 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 NOM1Q5C9Z4 860 aaKnown RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 MTMR6Q9Y217 621 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 DNM1Q05193 864 aaKnown RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 NUTM2GQ5VZR2 741 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 NBPF11Q86T75 865 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 TTC5Q8N0Z6 440 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 CNKSR1Q969H4 720 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 ZNF830Q96NB3 372 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 ALDH8A1Q9H2A2 487 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 PHAXQ9H814 394 aaKnown RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 PAXBP1Q9Y5B6 917 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 RASSF10A6NK89 507 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 CCP110O43303 1012 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 TYRO3Q06418 890 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 GIMAP6Q6P9H5 292 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 RAPGEF4Q8WZA2 1011 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 HCN4Q9Y3Q4 1203 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 RFX7Q2KHR2 1363 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 DHX16O60231 1041 aaKnown RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 RPS6KB1P23443 525 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 EIF6P56537 245 aaKnown RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 HABP4Q5JVS0 413 aaKnown RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 CEP57L1Q8IYX8 460 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 SUPT20HQ8NEM7 779 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 LLPHQ9BRT6 129 aaKnown RBP4.66□□□□□ -1.66
SCN1A-214ENST00000637038 SPTLC3Q9NUV7 552 aa4.66□□□□□ -1.66
SCN1A-214ENST00000637038 TIAM2Q8IVF5 1701 aa4.65□□□□□ -1.66
SCN1A-214ENST00000637038 LBX1P52954 281 aa4.65□□□□□ -1.66
SCN1A-214ENST00000637038 NMIQ13287 307 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-214ENST00000637038 SF3A1Q15459 793 aaKnown RBP4.65□□□□□ -1.66
SCN1A-214ENST00000637038 STX1AQ16623 288 aa4.65□□□□□ -1.66
SCN1A-214ENST00000637038 CCDC112Q8NEF3 446 aa4.65□□□□□ -1.66
SCN1A-214ENST00000637038 CLSTN2Q9H4D0 955 aa4.65□□□□□ -1.66
SCN1A-214ENST00000637038 DDX21Q9NR30 783 aaKnown RBP eCLIP4.65□□□□□ -1.66
SCN1A-214ENST00000637038 ANO10Q9NW15 660 aa4.65□□□□□ -1.66
SCN1A-214ENST00000637038 HACL1Q9UJ83 578 aa4.65□□□□□ -1.66
SCN1A-214ENST00000637038 NEDD4P46934 1319 aa4.65□□□□□ -1.66
SCN1A-214ENST00000637038 SLC27A2O14975 620 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 RNMTO43148 476 aaKnown RBP4.65□□□□□ -1.67
SCN1A-214ENST00000637038 TUBB4AP04350 444 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 NBPF7P0C2Y1 421 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-214ENST00000637038 PDIA6Q15084 440 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 TPD52L1Q16890 204 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-214ENST00000637038 SPC24Q8NBT2 197 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 VPS33BQ9H267 617 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 NUP98P52948 1817 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 GSDMDP57764 484 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 RASEFQ8IZ41 740 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 MAP4K1Q92918 833 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 NEK1Q96PY6 1258 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 KCNH6Q9H252 994 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 TTC12Q9H892 705 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-214ENST00000637038 PRDM16Q9HAZ2 1276 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 CGNQ9P2M7 1197 aaKnown RBP4.65□□□□□ -1.67
SCN1A-214ENST00000637038 CTNNA3Q9UI47 895 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 SBF2Q86WG5 1849 aa4.65□□□□□ -1.67
SCN1A-214ENST00000637038 SMTNL1A8MU46 457 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 NPHP1O15259 732 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 TATP17735 454 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-214ENST00000637038 NF2P35240 595 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 GTF2F1P35269 517 aaKnown RBP eCLIP4.64□□□□□ -1.67
SCN1A-214ENST00000637038 ZNF165P49910 485 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 SYCP1Q15431 976 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 CPLX2Q6PUV4 134 aaKnown RBP4.64□□□□□ -1.67
SCN1A-214ENST00000637038 USHBP1Q8N6Y0 703 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 CCDC34Q96HJ3 373 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 RRAGCQ9HB90 399 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 CHMP3Q9Y3E7 222 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 CDHR2Q9BYE9 1310 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 COL5A3P25940 1745 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-214ENST00000637038 MYH13Q9UKX3 1938 aa4.64□□□□□ -1.67
SCN1A-214ENST00000637038 FOXN1O15353 648 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms