RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 WWC3Q9ULE0 1092 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 TAF1P21675 1872 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 RASGRF1Q13972 1273 aa18.53■□□□□ 0.56
CLN3-251ENST00000636853 ZNF532Q9HCE3 1301 aa18.53■□□□□ 0.56
CLN3-251ENST00000636853 JAK2O60674 1132 aa18.53■□□□□ 0.56
CLN3-251ENST00000636853 RPS6KA4O75676 772 aa18.53■□□□□ 0.56
CLN3-251ENST00000636853 BCAMP50895 628 aa18.53■□□□□ 0.56
CLN3-251ENST00000636853 APOBRQ0VD83 1088 aa18.53■□□□□ 0.56
CLN3-251ENST00000636853 IMMTQ16891 758 aaKnown RBP18.53■□□□□ 0.56
CLN3-251ENST00000636853 NHSQ6T4R5 1651 aa18.53■□□□□ 0.56
CLN3-251ENST00000636853 MBD3O95983 291 aa18.52■□□□□ 0.56
CLN3-251ENST00000636853 PDE6AP16499 860 aa18.52■□□□□ 0.56
CLN3-251ENST00000636853 GTF2E1P29083 439 aaPredicted RBP18.52■□□□□ 0.56
CLN3-251ENST00000636853 RC3H1Q5TC82 1133 aaKnown RBP18.52■□□□□ 0.56
CLN3-251ENST00000636853 AMIGO3Q86WK7 504 aa18.52■□□□□ 0.56
CLN3-251ENST00000636853 CDC5LQ99459 802 aaKnown RBP18.52■□□□□ 0.56
CLN3-251ENST00000636853 ZNF445P59923 1031 aa18.52■□□□□ 0.55
CLN3-251ENST00000636853 SCRN1Q12765 414 aa18.52■□□□□ 0.55
CLN3-251ENST00000636853 CDC37L1Q7L3B6 337 aa18.52■□□□□ 0.55
CLN3-251ENST00000636853 NARFQ9UHQ1 456 aa18.52■□□□□ 0.55
CLN3-251ENST00000636853 ATP6V1DQ9Y5K8 247 aa18.52■□□□□ 0.55
CLN3-251ENST00000636853 SCN7AQ01118 1682 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 AFF2P51816 1311 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 HSPA1LP34931 641 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 DNM1Q05193 864 aaKnown RBP18.51■□□□□ 0.55
CLN3-251ENST00000636853 UBE3CQ15386 1083 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 TPRNQ4KMQ1 711 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 CASZ1Q86V15 1759 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 TCRBV5S4A2TA0A5A2 114 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 SF3B3Q15393 1217 aaKnown RBP18.51■□□□□ 0.55
CLN3-251ENST00000636853 FERMT3Q86UX7 667 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 ANKRD18AQ8IVF6 992 aa18.51■□□□□ 0.55
CLN3-251ENST00000636853 WTIPA6NIX2 430 aaPredicted RBP18.5■□□□□ 0.55
CLN3-251ENST00000636853 FIBPO43427 364 aa18.5■□□□□ 0.55
CLN3-251ENST00000636853 PDCP20941 246 aa18.5■□□□□ 0.55
CLN3-251ENST00000636853 TMEM87AQ8NBN3 555 aa18.5■□□□□ 0.55
CLN3-251ENST00000636853 AGXT2Q9BYV1 514 aa18.5■□□□□ 0.55
CLN3-251ENST00000636853 ZPR1O75312 459 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 CCDC24Q8N4L8 307 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 CERKQ8TCT0 537 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 DDX11Q96FC9 970 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 SETDB2Q96T68 719 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 NAP1L2Q9ULW6 460 aaPredicted RBP18.49■□□□□ 0.55
CLN3-251ENST00000636853 RTCBQ9Y3I0 505 aaKnown RBP18.49■□□□□ 0.55
CLN3-251ENST00000636853 ATRNO75882 1429 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 ZNF213O14771 459 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 PFKFB2O60825 505 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 MAGEB6Q8N7X4 407 aa18.49■□□□□ 0.55
CLN3-251ENST00000636853 GPHNQ9NQX3 736 aaPredicted RBP18.49■□□□□ 0.55
CLN3-251ENST00000636853 APPP05067 770 aa18.48■□□□□ 0.55
CLN3-251ENST00000636853 CCT2P78371 535 aaKnown RBP18.48■□□□□ 0.55
CLN3-251ENST00000636853 IQSEC3Q9UPP2 1182 aaPredicted RBP18.48■□□□□ 0.55
CLN3-251ENST00000636853 FAM173BQ6P4H8 233 aa18.48■□□□□ 0.55
CLN3-251ENST00000636853 CELF1Q92879 486 aaKnown RBP18.48■□□□□ 0.55
CLN3-251ENST00000636853 ARHGEF1Q92888 912 aaKnown RBP18.48■□□□□ 0.55
CLN3-251ENST00000636853 SYCE3A1L190 88 aa18.47■□□□□ 0.55
CLN3-251ENST00000636853 MAP3K12Q12852 859 aa18.47■□□□□ 0.55
CLN3-251ENST00000636853 SLC10A5Q5PT55 438 aa18.47■□□□□ 0.55
CLN3-251ENST00000636853 NBPF5PQ86XG9 351 aaPredicted RBP18.47■□□□□ 0.55
CLN3-251ENST00000636853 SBF2Q86WG5 1849 aa18.47■□□□□ 0.55
CLN3-251ENST00000636853 PHF14O94880 888 aa18.47■□□□□ 0.55
CLN3-251ENST00000636853 SEPT12Q8IYM1 358 aa18.47■□□□□ 0.55
CLN3-251ENST00000636853 AIDAQ96BJ3 306 aa18.47■□□□□ 0.55
CLN3-251ENST00000636853 NCOA5Q9HCD5 579 aaKnown RBP18.47■□□□□ 0.55
CLN3-251ENST00000636853 DOCK2Q92608 1830 aa18.47■□□□□ 0.55
CLN3-251ENST00000636853 TAF1LQ8IZX4 1826 aa18.46■□□□□ 0.55
CLN3-251ENST00000636853 RGL2O15211 777 aa18.46■□□□□ 0.55
CLN3-251ENST00000636853 CTDNEP1O95476 244 aa18.46■□□□□ 0.55
CLN3-251ENST00000636853 PDIA3P30101 505 aaKnown RBP18.46■□□□□ 0.55
CLN3-251ENST00000636853 MB21D2Q8IYB1 491 aaPredicted RBP18.46■□□□□ 0.55
CLN3-251ENST00000636853 STRBPQ96SI9 672 aaKnown RBP18.46■□□□□ 0.55
CLN3-251ENST00000636853 NYXQ9GZU5 481 aa18.46■□□□□ 0.55
CLN3-251ENST00000636853 NBPF3Q9H094 633 aa18.46■□□□□ 0.55
CLN3-251ENST00000636853 BSDC1Q9NW68 430 aaPredicted RBP18.46■□□□□ 0.55
CLN3-251ENST00000636853 PRC1O43663 620 aa18.46■□□□□ 0.54
CLN3-251ENST00000636853 PDIA4P13667 645 aaKnown RBP18.46■□□□□ 0.54
CLN3-251ENST00000636853 GYG1P46976 350 aa18.46■□□□□ 0.54
CLN3-251ENST00000636853 NSUN7Q8NE18 718 aaKnown RBP18.46■□□□□ 0.54
CLN3-251ENST00000636853 NCOA7Q8NI08 942 aa18.46■□□□□ 0.54
CLN3-251ENST00000636853 DENND2AQ9ULE3 1009 aa18.46■□□□□ 0.54
CLN3-251ENST00000636853 MINPP1Q9UNW1 487 aa18.46■□□□□ 0.54
CLN3-251ENST00000636853 LY75O60449 1722 aa18.45■□□□□ 0.54
CLN3-251ENST00000636853 A0A1B0GUL6 1792 aa18.45■□□□□ 0.54
CLN3-251ENST00000636853 PPFIA3O75145 1194 aa18.45■□□□□ 0.54
CLN3-251ENST00000636853 MBD4O95243 580 aa18.45■□□□□ 0.54
CLN3-251ENST00000636853 MCM5P33992 734 aa18.45■□□□□ 0.54
CLN3-251ENST00000636853 RALYLQ86SE5 291 aaKnown RBP18.45■□□□□ 0.54
CLN3-251ENST00000636853 SMARCC2Q8TAQ2 1214 aa18.45■□□□□ 0.54
CLN3-251ENST00000636853 ANTXR2P58335 489 aa18.44■□□□□ 0.54
CLN3-251ENST00000636853 TBC1D10CQ8IV04 446 aa18.44■□□□□ 0.54
CLN3-251ENST00000636853 FAM184AQ8NB25 1140 aa18.44■□□□□ 0.54
CLN3-251ENST00000636853 ZNF274Q96GC6 653 aaPredicted RBP18.44■□□□□ 0.54
CLN3-251ENST00000636853 NLRP3Q96P20 1036 aa18.44■□□□□ 0.54
CLN3-251ENST00000636853 LLPHQ9BRT6 129 aaKnown RBP18.44■□□□□ 0.54
CLN3-251ENST00000636853 ARMT1Q9H993 441 aa18.44■□□□□ 0.54
CLN3-251ENST00000636853 UBE2HP62256 183 aa18.44■□□□□ 0.54
CLN3-251ENST00000636853 NKX2-3Q8TAU0 364 aa18.44■□□□□ 0.54
CLN3-251ENST00000636853 TRPC5Q9UL62 973 aaPredicted RBP18.44■□□□□ 0.54
CLN3-251ENST00000636853 PTPDC1A2A3K4 754 aa18.43■□□□□ 0.54
CLN3-251ENST00000636853 ONECUT3O60422 494 aaPredicted RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms