RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 PDE6AP16499 860 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 EXOSC10Q01780 885 aaKnown RBP23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 GAS2L3Q86XJ1 694 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 ANKRD18AQ8IVF6 992 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 SETDB2Q96T68 719 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 MTMR6Q9Y217 621 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 A0A1B0GUL6 1792 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 RGL2O15211 777 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 F13A1P00488 732 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 SLC10A5Q5PT55 438 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 L1TD1Q5T7N2 865 aaKnown RBP23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 CAVIN1Q6NZI2 390 aaKnown RBP23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 CHST3Q7LGC8 479 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 BRPF3Q9ULD4 1205 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 COL24A1Q17RW2 1714 aa23.31■■□□□ 1.32
CHRNA4-209ENST00000627000 TCRBV5S4A2TA0A5A2 114 aa23.3■■□□□ 1.32
CHRNA4-209ENST00000627000 UBE3CQ15386 1083 aa23.3■■□□□ 1.32
CHRNA4-209ENST00000627000 CELF1Q92879 486 aaKnown RBP23.3■■□□□ 1.32
CHRNA4-209ENST00000627000 C4BP0C0L5 1744 aa23.3■■□□□ 1.32
CHRNA4-209ENST00000627000 PHF14O94880 888 aa23.3■■□□□ 1.32
CHRNA4-209ENST00000627000 FGD1P98174 961 aa23.3■■□□□ 1.32
CHRNA4-209ENST00000627000 GTF3C6Q969F1 213 aa23.3■■□□□ 1.32
CHRNA4-209ENST00000627000 CTNNA3Q9UI47 895 aa23.3■■□□□ 1.32
CHRNA4-209ENST00000627000 DOCK2Q92608 1830 aa23.29■■□□□ 1.32
CHRNA4-209ENST00000627000 NBPF5PQ86XG9 351 aaPredicted RBP23.29■■□□□ 1.32
CHRNA4-209ENST00000627000 C4AP0C0L4 1744 aa23.29■■□□□ 1.32
CHRNA4-209ENST00000627000 VPS37CA5D8V6 355 aaPredicted RBP23.28■■□□□ 1.32
CHRNA4-209ENST00000627000 XRCC6P12956 609 aaKnown RBP eCLIP23.28■■□□□ 1.32
CHRNA4-209ENST00000627000 IMMTQ16891 758 aaKnown RBP23.28■■□□□ 1.32
CHRNA4-209ENST00000627000 RBM27Q9P2N5 1060 aaKnown RBP23.28■■□□□ 1.32
CHRNA4-209ENST00000627000 APOBRQ0VD83 1088 aa23.28■■□□□ 1.32
CHRNA4-209ENST00000627000 LARP1BQ659C4 914 aaKnown RBP23.28■■□□□ 1.32
CHRNA4-209ENST00000627000 NYXQ9GZU5 481 aa23.28■■□□□ 1.32
CHRNA4-209ENST00000627000 LRRC4BQ9NT99 713 aa23.28■■□□□ 1.32
CHRNA4-209ENST00000627000 FAM196AQ6ZSG2 479 aa23.27■■□□□ 1.32
CHRNA4-209ENST00000627000 QTRT2Q9H974 415 aaKnown RBP23.27■■□□□ 1.32
CHRNA4-209ENST00000627000 BSDC1Q9NW68 430 aaPredicted RBP23.27■■□□□ 1.32
CHRNA4-209ENST00000627000 IQSEC3Q9UPP2 1182 aaPredicted RBP23.27■■□□□ 1.32
CHRNA4-209ENST00000627000 CNPY2Q9Y2B0 182 aa23.27■■□□□ 1.32
CHRNA4-209ENST00000627000 JAK2O60674 1132 aa23.27■■□□□ 1.32
CHRNA4-209ENST00000627000 MAGEB6Q8N7X4 407 aa23.27■■□□□ 1.32
CHRNA4-209ENST00000627000 SCRN1Q12765 414 aa23.26■■□□□ 1.31
CHRNA4-209ENST00000627000 USP48Q86UV5 1035 aa23.26■■□□□ 1.31
CHRNA4-209ENST00000627000 AGXT2Q9BYV1 514 aa23.26■■□□□ 1.31
CHRNA4-209ENST00000627000 MINPP1Q9UNW1 487 aa23.26■■□□□ 1.31
CHRNA4-209ENST00000627000 GADD45BO75293 160 aaPredicted RBP23.25■■□□□ 1.31
CHRNA4-209ENST00000627000 GYG1P46976 350 aa23.25■■□□□ 1.31
CHRNA4-209ENST00000627000 NLRP3Q96P20 1036 aa23.25■■□□□ 1.31
CHRNA4-209ENST00000627000 BCL11BQ9C0K0 894 aaPredicted RBP23.25■■□□□ 1.31
CHRNA4-209ENST00000627000 RFC4P35249 363 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 MAP3K12Q12852 859 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 CDC37L1Q7L3B6 337 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 GPHNQ9NQX3 736 aaPredicted RBP23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 ZNF213O14771 459 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 ZSCAN23Q3MJ62 389 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 TRAPPC3LQ5T215 181 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 TPTE2Q6XPS3 522 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 STRBPQ96SI9 672 aaKnown RBP23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 PANK2Q9BZ23 570 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 NBPF3Q9H094 633 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 TMEM63CQ9P1W3 806 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 EP400Q96L91 3159 aa23.24■■□□□ 1.31
CHRNA4-209ENST00000627000 PFKFB2O60825 505 aa23.23■■□□□ 1.31
CHRNA4-209ENST00000627000 APPP05067 770 aa23.23■■□□□ 1.31
CHRNA4-209ENST00000627000 AEBP2Q6ZN18 517 aaPredicted RBP23.23■■□□□ 1.31
CHRNA4-209ENST00000627000 AIDAQ96BJ3 306 aa23.23■■□□□ 1.31
CHRNA4-209ENST00000627000 GRPEL1Q9HAV7 217 aa23.23■■□□□ 1.31
CHRNA4-209ENST00000627000 UBE4AQ14139 1066 aa23.22■■□□□ 1.31
CHRNA4-209ENST00000627000 FERMT3Q86UX7 667 aa23.22■■□□□ 1.31
CHRNA4-209ENST00000627000 DENND2AQ9ULE3 1009 aa23.22■■□□□ 1.31
CHRNA4-209ENST00000627000 MRE11P49959 708 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 RPS8P62241 208 aaKnown RBP23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 DNM1Q05193 864 aaKnown RBP23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 MB21D2Q8IYB1 491 aaPredicted RBP23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 DDX11Q96FC9 970 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 TNRC6CQ9HCJ0 1690 aaKnown RBP23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 ZNF804BA4D1E1 1349 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 MBD4O95243 580 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 MBD3O95983 291 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 PDCP20941 246 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 CCT2P78371 535 aaKnown RBP23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 TMEM87AQ8NBN3 555 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 NKX2-3Q8TAU0 364 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 ARMT1Q9H993 441 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 NAP1L2Q9ULW6 460 aaPredicted RBP23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 ATP6V1DQ9Y5K8 247 aa23.21■■□□□ 1.31
CHRNA4-209ENST00000627000 BRWD3Q6RI45 1802 aa23.2■■□□□ 1.31
CHRNA4-209ENST00000627000 COL1A1P02452 1464 aaPredicted RBP23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 ANTXR2P58335 489 aa23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 TBC1D10CQ8IV04 446 aa23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 NCOA5Q9HCD5 579 aaKnown RBP23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 ISY1Q9ULR0 285 aaKnown RBP23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 FIBPO43427 364 aa23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 CTDNEP1O95476 244 aa23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 KLRK1P26718 216 aa23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 PDIA3P30101 505 aaKnown RBP23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 NFIXQ14938 502 aa23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 NCOA7Q8NI08 942 aa23.2■■□□□ 1.3
CHRNA4-209ENST00000627000 PRC1O43663 620 aa23.19■■□□□ 1.3
CHRNA4-209ENST00000627000 TM4SF1P30408 202 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms