RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 SAMM50Q9Y512 469 aa10.64□□□□□ -0.71
HDAC9-229ENST00000622668 KDRP35968 1356 aa10.64□□□□□ -0.71
HDAC9-229ENST00000622668 GNAT2P19087 354 aa10.64□□□□□ -0.71
HDAC9-229ENST00000622668 EIF5P55010 431 aaKnown RBP10.64□□□□□ -0.71
HDAC9-229ENST00000622668 WTAPQ15007 396 aa10.64□□□□□ -0.71
HDAC9-229ENST00000622668 SKAP1Q86WV1 359 aa10.64□□□□□ -0.71
HDAC9-229ENST00000622668 FHDC1Q9C0D6 1143 aaPredicted RBP10.64□□□□□ -0.71
HDAC9-229ENST00000622668 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.64□□□□□ -0.71
HDAC9-229ENST00000622668 NOL7Q9UMY1 257 aaKnown RBP10.64□□□□□ -0.71
HDAC9-229ENST00000622668 NOP58Q9Y2X3 529 aaKnown RBP10.63□□□□□ -0.71
HDAC9-229ENST00000622668 CCT2P78371 535 aaKnown RBP10.63□□□□□ -0.71
HDAC9-229ENST00000622668 CCDC102BQ68D86 513 aa10.63□□□□□ -0.71
HDAC9-229ENST00000622668 C3P01024 1663 aa10.63□□□□□ -0.71
HDAC9-229ENST00000622668 YY1P25490 414 aa10.63□□□□□ -0.71
HDAC9-229ENST00000622668 MYO3AQ8NEV4 1616 aa10.63□□□□□ -0.71
HDAC9-229ENST00000622668 SNAP23O00161 211 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 NLRP5P59047 1200 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 STK38Q15208 465 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 SLC10A4Q96EP9 437 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 EHMT1Q9H9B1 1298 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 REREQ9P2R6 1566 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 NBPF26B4DH59 902 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 NBPF10Q6P3W6 841 aaKnown RBP10.62□□□□□ -0.71
HDAC9-229ENST00000622668 CCDC73Q6ZRK6 1079 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 NBPF15Q8N660 670 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 B4DLN1 442 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 PLSCR1O15162 318 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 MRPL12P52815 198 aaKnown RBP10.62□□□□□ -0.71
HDAC9-229ENST00000622668 RABEP1Q15276 862 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 KRT26Q7Z3Y9 468 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 TTLL11Q8NHH1 800 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 WASF1Q92558 559 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 TCEANC2Q96MN5 208 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 LARP6Q9BRS8 491 aaKnown RBP10.62□□□□□ -0.71
HDAC9-229ENST00000622668 LRRC2Q9BYS8 371 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 KRT23Q9C075 422 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 TMEM131LA2VDJ0 1609 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 IQGAP1P46940 1657 aa10.62□□□□□ -0.71
HDAC9-229ENST00000622668 CCDC194A0A1B0GVG4 234 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 SASH1O94885 1247 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 PHKA1P46020 1223 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 KIAA2012Q0VF49 1180 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 ARHGEF6Q15052 776 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 C9orf131Q5VYM1 1079 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 CSRNP1Q96S65 589 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 HOOK1Q9UJC3 728 aaKnown RBP10.61□□□□□ -0.71
HDAC9-229ENST00000622668 ZBTB7BO15156 539 aaPredicted RBP10.61□□□□□ -0.71
HDAC9-229ENST00000622668 TRAF1Q13077 416 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 CKAP2LQ8IYA6 745 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 PCMTD1Q96MG8 357 aaPredicted RBP10.61□□□□□ -0.71
HDAC9-229ENST00000622668 ANGEL1Q9UNK9 670 aaKnown RBP10.61□□□□□ -0.71
HDAC9-229ENST00000622668 CD163L1Q9NR16 1453 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 HMGB1P09429 215 aaKnown RBP10.61□□□□□ -0.71
HDAC9-229ENST00000622668 MATR3P43243 847 aaKnown RBP eCLIP10.61□□□□□ -0.71
HDAC9-229ENST00000622668 BTDP43251 543 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 SP4Q02446 784 aa10.61□□□□□ -0.71
HDAC9-229ENST00000622668 SPDYE4A6NLX3 237 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 MCM2P49736 904 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 LARP1BQ659C4 914 aaKnown RBP10.6□□□□□ -0.71
HDAC9-229ENST00000622668 SDF4Q9BRK5 362 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 COA1Q9GZY4 146 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 ZBTB40Q9NUA8 1239 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 NOD1Q9Y239 953 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 NCAPD2Q15021 1401 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 ECE2O60344 883 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 MCM5P33992 734 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 NMIQ13287 307 aaPredicted RBP10.6□□□□□ -0.71
HDAC9-229ENST00000622668 CCDC178Q5BJE1 867 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 ZKSCAN3Q9BRR0 538 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 CNNM2Q9H8M5 875 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 USP42Q9H9J4 1324 aaKnown RBP10.6□□□□□ -0.71
HDAC9-229ENST00000622668 CNGA1P29973 690 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 NSMFQ6X4W1 530 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 MIGA2Q7L4E1 593 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 PTF1AQ7RTS3 328 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 DCTPP1Q9H773 170 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 HOMER2Q9NSB8 354 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 LAMC1P11047 1609 aa10.6□□□□□ -0.71
HDAC9-229ENST00000622668 GYS1P13807 737 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 GUCY1B3Q02153 619 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 CERS3Q8IU89 383 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 KRI1Q8N9T8 703 aaKnown RBP10.59□□□□□ -0.71
HDAC9-229ENST00000622668 SMARCC2Q8TAQ2 1214 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 CEP89Q96ST8 783 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 GPCPD1Q9NPB8 672 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 ZNF532Q9HCE3 1301 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 BECN2A8MW95 431 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 PODNQ7Z5L7 613 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 EDC3Q96F86 508 aaKnown RBP10.59□□□□□ -0.71
HDAC9-229ENST00000622668 NEK1Q96PY6 1258 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 AS3MTQ9HBK9 375 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 BSDC1Q9NW68 430 aaPredicted RBP10.59□□□□□ -0.71
HDAC9-229ENST00000622668 TTC41PQ6P2S7 1318 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 IGHDP01880 384 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 TPM2P07951 284 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 SDSP20132 328 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 IARSP41252 1262 aaKnown RBP10.59□□□□□ -0.71
HDAC9-229ENST00000622668 SLC1A4P43007 532 aa10.59□□□□□ -0.71
HDAC9-229ENST00000622668 IREB2P48200 963 aaKnown RBP10.59□□□□□ -0.71
HDAC9-229ENST00000622668 DHX8Q14562 1220 aaKnown RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms