RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 PLIN2Q99541 437 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 MYOM3Q5VTT5 1437 aa17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 CCT6AP40227 531 aaKnown RBP17.22■□□□□ 0.35
PDLIM2-220ENST00000622226 SLC5A1P13866 664 aa17.21■□□□□ 0.35
PDLIM2-220ENST00000622226 CEP128Q6ZU80 1094 aa17.21■□□□□ 0.35
PDLIM2-220ENST00000622226 FAM212AQ96EL1 285 aa17.21■□□□□ 0.35
PDLIM2-220ENST00000622226 NKTRP30414 1462 aaKnown RBP17.21■□□□□ 0.35
PDLIM2-220ENST00000622226 CC2D2AQ9P2K1 1620 aa17.21■□□□□ 0.35
PDLIM2-220ENST00000622226 KAT6BQ8WYB5 2073 aa17.21■□□□□ 0.35
PDLIM2-220ENST00000622226 BAG1Q99933 345 aaPredicted RBP17.21■□□□□ 0.35
PDLIM2-220ENST00000622226 TACC3Q9Y6A5 838 aa17.21■□□□□ 0.35
PDLIM2-220ENST00000622226 VCXQ9H320 206 aa17.21■□□□□ 0.34
PDLIM2-220ENST00000622226 ATP2A2P16615 1042 aaKnown RBP17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 OAS2P29728 719 aaKnown RBP17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 RASA3Q14644 834 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 FYB2Q5VWT5 728 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 CABS1Q96KC9 395 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 GPIHBP1Q8IV16 184 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 PLEKHA4Q9H4M7 779 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 FGD6Q6ZV73 1430 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 LRRC27Q9C0I9 530 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 Q6ZUG5 572 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 RAPGEF1Q13905 1077 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 LONRF3Q496Y0 759 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 LRRC45Q96CN5 670 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 ANKRD50Q9ULJ7 1429 aa17.2■□□□□ 0.34
PDLIM2-220ENST00000622226 WHAMMP3Q1A5X7 153 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 HEATR3Q7Z4Q2 680 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 DDX21Q9NR30 783 aaKnown RBP eCLIP17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 SDSP20132 328 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 STX8Q9UNK0 236 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 ERBINQ96RT1 1412 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 PLS1Q14651 629 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 CABLES1Q8TDN4 633 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 GDAP1L1Q96MZ0 367 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 GBP5Q96PP8 586 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 E7EVH7 732 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 TUBB4AP04350 444 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 PRR16Q569H4 304 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 DACT3Q96B18 629 aaPredicted RBP17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 DMRT2Q9Y5R5 561 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 SNX16P57768 344 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 INF2Q27J81 1249 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 KRT28Q7Z3Y7 464 aa17.19■□□□□ 0.34
PDLIM2-220ENST00000622226 MAP7Q14244 749 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 TSC1Q92574 1164 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 TSPYL2Q9H2G4 693 aaPredicted RBP17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 USH1CQ9Y6N9 552 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 NBPF7P0C2Y1 421 aaPredicted RBP17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 ALDH1L2Q3SY69 923 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 TCHPQ9BT92 498 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 CRCPO75575 148 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 LRCH2Q5VUJ6 765 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 C8orf74Q6P047 294 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 CHST3Q7LGC8 479 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 LEO1Q8WVC0 666 aaPredicted RBP17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 PSMB7Q99436 277 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 ZBTB43O43298 467 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 WTAPQ15007 396 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 ERCC6LQ2NKX8 1250 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 ZGPATQ8N5A5 531 aaKnown RBP17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 RNF10Q8N5U6 811 aaKnown RBP17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 STAC3Q96MF2 364 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 SBNO2Q9Y2G9 1366 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 SPTLC2O15270 562 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 CLUL1Q15846 466 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 COG7P83436 770 aa17.18■□□□□ 0.34
PDLIM2-220ENST00000622226 KSR1Q8IVT5 923 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 ZNF652Q9Y2D9 606 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 SYNJ2O15056 1496 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 MGARPQ8TDB4 240 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 FYCO1Q9BQS8 1478 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 RBSNQ9H1K0 784 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 CCT6BQ92526 530 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 AMOTL2Q9Y2J4 779 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 CAPN7Q9Y6W3 813 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 FAM170AA1A519 330 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 FAM13AO94988 1023 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 PPP2R5CQ13362 524 aa17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 TRMT112Q9UI30 125 aaKnown RBP17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 LRPPRCP42704 1394 aaKnown RBP17.17■□□□□ 0.34
PDLIM2-220ENST00000622226 CCDC62Q6P9F0 684 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.16■□□□□ 0.349e-7■□□□□ 8.4
PDLIM2-220ENST00000622226 TFCP2L1Q9NZI6 479 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 TUBB4BP68371 445 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 CCDC26Q8TAB7 109 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 GJA3Q9Y6H8 435 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 AKR1B15C9JRZ8 316 aaPredicted RBP17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 SEL1L2Q5TEA6 688 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 RPAINQ86UA6 219 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 MTUS1Q9ULD2 1270 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 NSD3Q9BZ95 1437 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 NCKAP5LQ9HCH0 1330 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 CETN3O15182 167 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 SMIM24O75264 130 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 HS1BP3Q53T59 392 aa17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 DCAF17Q5H9S7 520 aaPredicted RBP17.16■□□□□ 0.34
PDLIM2-220ENST00000622226 RBM8AQ9Y5S9 174 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms