RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 CCDC34Q96HJ3 373 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.54□□□□□ -0.722e-10■■■□□ 18.4
GGA3-222ENST00000621217 H0YHG0 523 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 PDE8AO60658 829 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 TRAPPC3LQ5T215 181 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 TSC1Q92574 1164 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 HMG20BQ9P0W2 317 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 SLC4A4Q9Y6R1 1079 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 LIG1P18858 919 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 PPP4R3BQ5MIZ7 849 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 ZKSCAN5Q9Y2L8 839 aa10.54□□□□□ -0.72
GGA3-222ENST00000621217 GYG1P46976 350 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 GIGYF2Q6Y7W6 1299 aaKnown RBP10.53□□□□□ -0.72
GGA3-222ENST00000621217 MTMR6Q9Y217 621 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 TAF6LQ9Y6J9 622 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 RNF113AO15541 343 aaKnown RBP10.53□□□□□ -0.72
GGA3-222ENST00000621217 FTOQ9C0B1 505 aaKnown RBP eCLIP10.53□□□□□ -0.72
GGA3-222ENST00000621217 AOX1Q06278 1338 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 BCAMP50895 628 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 TYRO3Q06418 890 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 CCDC186Q7Z3E2 898 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 MYL10Q9BUA6 226 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 QTRT2Q9H974 415 aaKnown RBP10.53□□□□□ -0.72
GGA3-222ENST00000621217 MKNK2Q9HBH9 465 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 ADGRB2O60241 1585 aa10.53□□□□□ -0.72
GGA3-222ENST00000621217 PRC1O43663 620 aa10.52□□□□□ -0.72
GGA3-222ENST00000621217 CLSTN1O94985 981 aa10.52□□□□□ -0.72
GGA3-222ENST00000621217 TMEM67Q5HYA8 995 aa10.52□□□□□ -0.72
GGA3-222ENST00000621217 TIGD1Q96MW7 591 aa10.52□□□□□ -0.72
GGA3-222ENST00000621217 ARMT1Q9H993 441 aa10.52□□□□□ -0.72
GGA3-222ENST00000621217 MAP3K15Q6ZN16 1313 aa10.52□□□□□ -0.72
GGA3-222ENST00000621217 MBD4O95243 580 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 CCDC70Q6NSX1 233 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 TTC6Q86TZ1 520 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 CLIP2Q9UDT6 1046 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 USP8P40818 1118 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 PHKA1P46020 1223 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 CTSWP56202 376 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 CUL4AQ13619 759 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 DHX32Q7L7V1 743 aaKnown RBP10.52□□□□□ -0.73
GGA3-222ENST00000621217 KBTBD3Q8NAB2 608 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 ZBTB38Q8NAP3 1195 aaPredicted RBP10.52□□□□□ -0.73
GGA3-222ENST00000621217 PRIMPOLQ96LW4 560 aa10.52□□□□□ -0.73
GGA3-222ENST00000621217 A0A1B0GVL5 298 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 SERPINC1P01008 464 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 PTGS1P23219 599 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 ZSWIM6Q9HCJ5 1215 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 GPHNQ9NQX3 736 aaPredicted RBP10.51□□□□□ -0.73
GGA3-222ENST00000621217 IFT172Q9UG01 1749 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 NEURL4Q96JN8 1562 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 MPHOSPH10O00566 681 aaKnown RBP10.51□□□□□ -0.73
GGA3-222ENST00000621217 GPAA1O43292 621 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 OFD1O75665 1012 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 FAM196AQ6ZSG2 479 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 NLRP10Q86W26 655 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 TRIM22Q8IYM9 498 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 NAT10Q9H0A0 1025 aaKnown RBP10.51□□□□□ -0.73
GGA3-222ENST00000621217 STX8Q9UNK0 236 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.51□□□□□ -0.73
GGA3-222ENST00000621217 NRKQ7Z2Y5 1582 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 CYP21A2P08686 494 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 HMGB1P09429 215 aaKnown RBP10.51□□□□□ -0.73
GGA3-222ENST00000621217 CNBD1Q8NA66 436 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 VAT1LQ9HCJ6 419 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 SLC12A7Q9Y666 1083 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 RGS12O14924 1447 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 KIF13AQ9H1H9 1805 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 B4E1Z4 1266 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 IRX3P78415 501 aaPredicted RBP10.51□□□□□ -0.73
GGA3-222ENST00000621217 HS1BP3Q53T59 392 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 NAA16Q6N069 864 aaPredicted RBP10.51□□□□□ -0.73
GGA3-222ENST00000621217 CEP57L1Q8IYX8 460 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 MAP4K1Q92918 833 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 SLC26A6Q9BXS9 759 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 TMX1Q9H3N1 280 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 COPRSQ9NQ92 184 aa10.51□□□□□ -0.73
GGA3-222ENST00000621217 KIF20BQ96Q89 1820 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 PICALMQ13492 652 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 MFSD6Q6ZSS7 791 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 NCOA7Q8NI08 942 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 CDCA7Q9BWT1 371 aaPredicted RBP10.5□□□□□ -0.73
GGA3-222ENST00000621217 GOLGA8AA7E2F4 631 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 KIF20AO95235 890 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 ATP5JP18859 108 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 SUSD4Q5VX71 490 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 KLHL10Q6JEL2 608 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 CCDC94Q9BW85 323 aaPredicted RBP10.5□□□□□ -0.73
GGA3-222ENST00000621217 APBA3O96018 575 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 SLC3A2P08195 630 aaKnown RBP10.5□□□□□ -0.73
GGA3-222ENST00000621217 UQCRFS1P1P0C7P4 283 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 METAP2P50579 478 aaKnown RBP eCLIP10.5□□□□□ -0.73
GGA3-222ENST00000621217 NOLC1Q14978 699 aaKnown RBP eCLIP10.5□□□□□ -0.735e-6■□□□□ 9.2
GGA3-222ENST00000621217 TTF1Q15361 905 aaPredicted RBP10.5□□□□□ -0.73
GGA3-222ENST00000621217 DDX19AQ9NUU7 478 aaKnown RBP10.5□□□□□ -0.73
GGA3-222ENST00000621217 ITSN1Q15811 1721 aa10.5□□□□□ -0.73
GGA3-222ENST00000621217 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.5□□□□□ -0.73
GGA3-222ENST00000621217 PXDNQ92626 1479 aa10.49□□□□□ -0.73
GGA3-222ENST00000621217 OLFM4Q6UX06 510 aa10.49□□□□□ -0.73
GGA3-222ENST00000621217 LEO1Q8WVC0 666 aaPredicted RBP10.49□□□□□ -0.73
GGA3-222ENST00000621217 ZBTB9Q96C00 473 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms