RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 LRRN4CLQ8ND94 238 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 MAP4K1Q92918 833 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 ARFGAP3Q9NP61 516 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 HMG20BQ9P0W2 317 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 CACNA1FO60840 1977 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 RPS6KB1P23443 525 aa12.55□□□□□ -0.4
UPF3A-212ENST00000619079 GTF2A1P52655 376 aaPredicted RBP12.55□□□□□ -0.4
UPF3A-212ENST00000619079 MTHFSDQ2M296 383 aaKnown RBP12.55□□□□□ -0.4
UPF3A-212ENST00000619079 CC2D1AQ6P1N0 951 aaPredicted RBP12.55□□□□□ -0.4
UPF3A-212ENST00000619079 ECHDC1Q9NTX5 307 aa12.55□□□□□ -0.4
UPF3A-212ENST00000619079 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.55□□□□□ -0.4
UPF3A-212ENST00000619079 SRGAP3O43295 1099 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 LEKR1Q6ZMV7 388 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 FCHSD1Q86WN1 690 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 IFNL2Q8IZJ0 200 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 CLASRPQ8N2M8 674 aaKnown RBP12.54□□□□□ -0.4
UPF3A-212ENST00000619079 NFATC2IPQ8NCF5 419 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 SNRKQ9NRH2 765 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 RCOR1Q9UKL0 485 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 RRP15Q9Y3B9 282 aaKnown RBP12.54□□□□□ -0.4
UPF3A-212ENST00000619079 PARP4Q9UKK3 1724 aaKnown RBP12.54□□□□□ -0.4
UPF3A-212ENST00000619079 A0A1B0GUL7 405 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 SLC27A2O14975 620 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 ACTN2P35609 894 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 GORABQ5T7V8 394 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 ARMCX5Q6P1M9 558 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 TMC6Q7Z403 805 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 MARCH10Q8NA82 808 aaPredicted RBP12.54□□□□□ -0.4
UPF3A-212ENST00000619079 MPHOSPH8Q99549 860 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 ATG3Q9NT62 314 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 THSD7AQ9UPZ6 1657 aa12.54□□□□□ -0.4
UPF3A-212ENST00000619079 CYP27B1O15528 508 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 ZSCAN12O43309 604 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 SMC2O95347 1197 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 EVCP57679 992 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 MIS18AQ9NYP9 233 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 LRRC37A3O60309 1634 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 GOLGA6L9A6NEM1 432 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 DTNBO60941 627 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 URI1O94763 535 aaPredicted RBP12.53□□□□□ -0.4
UPF3A-212ENST00000619079 KRT32Q14532 448 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 BRF1Q92994 677 aa12.53□□□□□ -0.4
UPF3A-212ENST00000619079 SYTL4Q96C24 671 aaPredicted RBP12.53□□□□□ -0.4
UPF3A-212ENST00000619079 ZNF396Q96N95 335 aaPredicted RBP12.53□□□□□ -0.4
UPF3A-212ENST00000619079 PLEKHG2Q9H7P9 1386 aa12.52□□□□□ -0.4
UPF3A-212ENST00000619079 PHKG2P15735 406 aa12.52□□□□□ -0.4
UPF3A-212ENST00000619079 OS9Q13438 667 aaPredicted RBP12.52□□□□□ -0.4
UPF3A-212ENST00000619079 TOB2Q14106 344 aaPredicted RBP12.52□□□□□ -0.4
UPF3A-212ENST00000619079 TSGA10IPQ3SY00 556 aa12.52□□□□□ -0.4
UPF3A-212ENST00000619079 NAA16Q6N069 864 aaPredicted RBP12.52□□□□□ -0.4
UPF3A-212ENST00000619079 CARD6Q9BX69 1037 aa12.52□□□□□ -0.4
UPF3A-212ENST00000619079 XPO4Q9C0E2 1151 aaKnown RBP12.52□□□□□ -0.4
UPF3A-212ENST00000619079 WNK3Q9BYP7 1800 aa12.52□□□□□ -0.4
UPF3A-212ENST00000619079 SASH3O75995 380 aa12.52□□□□□ -0.41
UPF3A-212ENST00000619079 SEC31AO94979 1220 aaKnown RBP12.52□□□□□ -0.41
UPF3A-212ENST00000619079 LMAN1P49257 510 aa12.52□□□□□ -0.41
UPF3A-212ENST00000619079 AKAP4Q5JQC9 854 aa12.52□□□□□ -0.41
UPF3A-212ENST00000619079 ERC1Q8IUD2 1116 aa12.52□□□□□ -0.41
UPF3A-212ENST00000619079 ENGASEQ8NFI3 743 aa12.52□□□□□ -0.41
UPF3A-212ENST00000619079 RABGGTAQ92696 567 aa12.52□□□□□ -0.41
UPF3A-212ENST00000619079 ADAM21Q9UKJ8 722 aa12.52□□□□□ -0.41
UPF3A-212ENST00000619079 PARP3Q9Y6F1 533 aa12.52□□□□□ -0.41
UPF3A-212ENST00000619079 TRIM66O15016 1216 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 CHRM1P11229 460 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-212ENST00000619079 MPRIPQ6WCQ1 1025 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 ACSBG1Q96GR2 724 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 LLPHQ9BRT6 129 aaKnown RBP12.51□□□□□ -0.41
UPF3A-212ENST00000619079 IFNKQ9P0W0 207 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 GNAT3A8MTJ3 354 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 MAGEA9P43362 315 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 TRIM65Q6PJ69 517 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 FAM196AQ6ZSG2 479 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 PAXIP1Q6ZW49 1069 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-212ENST00000619079 REXO1L1PQ8IX06 675 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 MSL3Q8N5Y2 521 aaKnown RBP12.51□□□□□ -0.41
UPF3A-212ENST00000619079 BABAM1Q9NWV8 329 aa12.51□□□□□ -0.41
UPF3A-212ENST00000619079 CCDC151A5D8V7 595 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 RPS6KA5O75582 802 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 IFIT2P09913 472 aaKnown RBP12.5□□□□□ -0.41
UPF3A-212ENST00000619079 BRD3Q15059 726 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 TTC31Q49AM3 519 aaPredicted RBP12.5□□□□□ -0.41
UPF3A-212ENST00000619079 CERS3Q8IU89 383 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 FUT8Q9BYC5 575 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 GOLPH3LQ9H4A5 285 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 ZCCHC17Q9NP64 241 aaKnown RBP12.5□□□□□ -0.41
UPF3A-212ENST00000619079 LCMT1Q9UIC8 334 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 CBFA2T2O43439 604 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 ILDR2Q71H61 639 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 FSIP1Q8NA03 581 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 CCDC34Q96HJ3 373 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 SDF4Q9BRK5 362 aa12.5□□□□□ -0.41
UPF3A-212ENST00000619079 MKRN1Q9UHC7 482 aaKnown RBP12.5□□□□□ -0.41
UPF3A-212ENST00000619079 EIF3JO75822 258 aaKnown RBP12.49□□□□□ -0.41
UPF3A-212ENST00000619079 GUCY2CP25092 1073 aa12.49□□□□□ -0.41
UPF3A-212ENST00000619079 ADD1P35611 737 aaKnown RBP12.49□□□□□ -0.41
UPF3A-212ENST00000619079 STK3Q13188 491 aa12.49□□□□□ -0.41
UPF3A-212ENST00000619079 MRPS27Q92552 414 aaKnown RBP12.49□□□□□ -0.41
UPF3A-212ENST00000619079 GOLGA1Q92805 767 aa12.49□□□□□ -0.41
UPF3A-212ENST00000619079 DCAF5Q96JK2 942 aa12.49□□□□□ -0.41
UPF3A-212ENST00000619079 TUBB4BP68371 445 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms