RNA–Protein interactions for RNA: ENST00000610733.1

TPM1-233, Transcript of tropomyosin 1, human

TSL 2 BASIC

Gene TPM1, Length 3,957 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-233	ENST00000610733	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.05	□□□□□ -0.64
TPM1-233	ENST00000610733	GOLPH3L	Q9H4A5	285 aa		11.05	□□□□□ -0.64
TPM1-233	ENST00000610733	CTAGE5	O15320	804 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	MATR3	P43243	847 aa	Known RBP eCLIP	11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	SYNE4	Q8N205	404 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	DRC1	Q96MC2	740 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	UIMC1	Q96RL1	719 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	UBAC1	Q9BSL1	405 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	CAMSAP1	Q5T5Y3	1602 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	SHROOM2	Q13796	1616 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	IGKV5-2	P06315	115 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	CCT6A	P40227	531 aa	Known RBP	11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	TERF1	P54274	439 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	IFNL2	Q8IZJ0	200 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	NCOA7	Q8NI08	942 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	LAMC1	P11047	1609 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	CFAP74	Q9C0B2	1584 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	ARHGEF40	Q8TER5	1519 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	GPS2	Q13227	327 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	MTX1	Q13505	466 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	NEK11	Q8NG66	645 aa		11.04	□□□□□ -0.64
TPM1-233	ENST00000610733	HMGB1	P09429	215 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	FANCC	Q00597	558 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	POLA2	Q14181	598 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	CCDC102B	Q68D86	513 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	AXIN2	Q9Y2T1	843 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	KIF24	Q5T7B8	1368 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	AATK	Q6ZMQ8	1374 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	HSPD1	P10809	573 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	SART3	Q15020	963 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	KBTBD3	Q8NAB2	608 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	NOC3L	Q8WTT2	800 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	PLEKHA4	Q9H4M7	779 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	PATL2	C9JE40	543 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	RNF113A	O15541	343 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	CTDSPL2	Q05D32	466 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	CCDC24	Q8N4L8	307 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	METTL22	Q9BUU2	404 aa	Predicted RBP	11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	OGFR	Q9NZT2	677 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	ADGRB3	O60242	1522 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	PTPRM	P28827	1452 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	MROH2A	A6NES4	1674 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	ADGRB1	O14514	1584 aa		11.03	□□□□□ -0.64
TPM1-233	ENST00000610733	ZBTB43	O43298	467 aa		11.02	□□□□□ -0.64
TPM1-233	ENST00000610733	IPO7	O95373	1038 aa	Known RBP	11.02	□□□□□ -0.64
TPM1-233	ENST00000610733	EVC	P57679	992 aa		11.02	□□□□□ -0.64
TPM1-233	ENST00000610733	NSUN7	Q8NE18	718 aa	Known RBP	11.02	□□□□□ -0.64
TPM1-233	ENST00000610733	ZNF397	Q8NF99	534 aa	Predicted RBP	11.02	□□□□□ -0.64
TPM1-233	ENST00000610733	TM6SF1	Q9BZW5	370 aa		11.02	□□□□□ -0.64
TPM1-233	ENST00000610733	ZCCHC17	Q9NP64	241 aa	Known RBP	11.02	□□□□□ -0.64
TPM1-233	ENST00000610733	EPB41L2	O43491	1005 aa	Known RBP	11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	GSDMD	P57764	484 aa		11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	CENPH	Q9H3R5	247 aa		11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	MYO3A	Q8NEV4	1616 aa		11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	POLR2D	O15514	142 aa	Known RBP	11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	FBXO38	Q6PIJ6	1188 aa		11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	FANCL	Q9NW38	375 aa		11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	USP6	P35125	1406 aa		11.02	□□□□□ -0.65
TPM1-233	ENST00000610733	ANKRD65	E5RJM6	399 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	GPAA1	O43292	621 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	CASP1	P29466	404 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	PDIA3	P30101	505 aa	Known RBP	11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	ST3GAL1	Q11201	340 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	STOX1	Q6ZVD7	989 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	CAPZA3	Q96KX2	299 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	NUP88	Q99567	741 aa	Predicted RBP	11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	AOX1	Q06278	1338 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	PFKFB1	P16118	471 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	DNAJC21	Q5F1R6	531 aa	Known RBP	11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	KCNG4	Q8TDN1	519 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	CD163L1	Q9NR16	1453 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	CRB1	P82279	1406 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	KIF20A	O95235	890 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	FGA	P02671	866 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	DMTN	Q08495	405 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	FILIP1L	Q4L180	1135 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	ANO1	Q5XXA6	986 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	SMYD4	Q8IYR2	804 aa	Predicted RBP	11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	XAGE2	Q96GT9	111 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	ARHGEF10	O15013	1369 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	SSRP1	Q08945	709 aa	Known RBP	11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	REST	Q13127	1097 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	BMS1	Q14692	1282 aa	Known RBP	11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	ANKRD20A12P	Q8NF67	263 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	CABP5	Q9NP86	173 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	KIAA1468	Q9P260	1216 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	DENND2A	Q9ULE3	1009 aa		11.01	□□□□□ -0.65
TPM1-233	ENST00000610733	CBFA2T2	O43439	604 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733	PTPN12	Q05209	780 aa	Known RBP	11	□□□□□ -0.65
TPM1-233	ENST00000610733	C10orf67	Q8IYJ2	551 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733	SMARCE1	Q969G3	411 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733	TMEM2	Q9UHN6	1383 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733	UBE2Q2L	H0YL09	131 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733	SSB	P05455	408 aa	Known RBP eCLIP	11	□□□□□ -0.65
TPM1-233	ENST00000610733	OSBP2	Q969R2	916 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733	PSMB7	Q99436	277 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733	ZHX3	Q9H4I2	956 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733		M0R2C6	588 aa		11	□□□□□ -0.65
TPM1-233	ENST00000610733	ATP5J	P18859	108 aa		11	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms