RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TIGD1Q96MW7 591 aa21.33■■□□□ 1.01
UPF1-210ENST00000600689 ADAMTS7Q9UKP4 1686 aa21.33■■□□□ 1.01
UPF1-210ENST00000600689 MNS1Q8NEH6 495 aa21.33■■□□□ 1
UPF1-210ENST00000600689 SCN11AQ9UI33 1791 aa21.33■■□□□ 1
UPF1-210ENST00000600689 MARCKSP29966 332 aaPredicted RBP21.32■■□□□ 1
UPF1-210ENST00000600689 MRPS27Q92552 414 aaKnown RBP21.32■■□□□ 1
UPF1-210ENST00000600689 UBXN4Q92575 508 aa21.32■■□□□ 1
UPF1-210ENST00000600689 ZNF396Q96N95 335 aaPredicted RBP21.32■■□□□ 1
UPF1-210ENST00000600689 PLCD3Q8N3E9 789 aa21.32■■□□□ 1
UPF1-210ENST00000600689 CCDC34Q96HJ3 373 aa21.32■■□□□ 1
UPF1-210ENST00000600689 CAVIN2O95810 425 aa21.32■■□□□ 1
UPF1-210ENST00000600689 BMS1Q14692 1282 aaKnown RBP21.32■■□□□ 1
UPF1-210ENST00000600689 HSP90AB3PQ58FF7 597 aa21.32■■□□□ 1
UPF1-210ENST00000600689 TAF3Q5VWG9 929 aa21.32■■□□□ 1
UPF1-210ENST00000600689 CRYBG1Q9Y4K1 1723 aa21.31■■□□□ 1
UPF1-210ENST00000600689 DDX58O95786 925 aaKnown RBP21.31■■□□□ 1
UPF1-210ENST00000600689 PDIA4P13667 645 aaKnown RBP21.31■■□□□ 1
UPF1-210ENST00000600689 UBE3BQ7Z3V4 1068 aa21.31■■□□□ 1
UPF1-210ENST00000600689 ENGASEQ8NFI3 743 aa21.31■■□□□ 1
UPF1-210ENST00000600689 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.31■■□□□ 1
UPF1-210ENST00000600689 BRINP3Q76B58 766 aa21.31■■□□□ 1
UPF1-210ENST00000600689 ILDR1Q86SU0 546 aaPredicted RBP21.31■■□□□ 1
UPF1-210ENST00000600689 CARD6Q9BX69 1037 aa21.31■■□□□ 1
UPF1-210ENST00000600689 MCMDC2Q4G0Z9 681 aa21.3■■□□□ 1
UPF1-210ENST00000600689 UTP14AQ9BVJ6 771 aaKnown RBP21.3■■□□□ 1
UPF1-210ENST00000600689 ZSWIM4Q9H7M6 989 aa21.3■■□□□ 1
UPF1-210ENST00000600689 U3KPZ7 1027 aaPredicted RBP21.3■■□□□ 1
UPF1-210ENST00000600689 DCCP43146 1447 aa21.3■■□□□ 1
UPF1-210ENST00000600689 GYS2P54840 703 aa21.3■■□□□ 1
UPF1-210ENST00000600689 GSDMDP57764 484 aa21.3■■□□□ 1
UPF1-210ENST00000600689 PNMA6AP0CW24 399 aaPredicted RBP21.3■■□□□ 1
UPF1-210ENST00000600689 TTC5Q8N0Z6 440 aa21.3■■□□□ 1
UPF1-210ENST00000600689 ZNF609O15014 1411 aa21.29■■□□□ 1
UPF1-210ENST00000600689 HNRNPH2P55795 449 aaKnown RBP21.29■■□□□ 1
UPF1-210ENST00000600689 NEXNQ0ZGT2 675 aa21.29■■□□□ 1
UPF1-210ENST00000600689 TNNI3KQ59H18 835 aa21.29■■□□□ 1
UPF1-210ENST00000600689 DHX32Q7L7V1 743 aaKnown RBP21.29■■□□□ 1
UPF1-210ENST00000600689 FHOD1Q9Y613 1164 aa21.29■■□□□ 1
UPF1-210ENST00000600689 FPGT-TNNI3KV9GXZ4 949 aa21.29■■□□□ 1
UPF1-210ENST00000600689 PFKFB2O60825 505 aa21.29■■□□□ 1
UPF1-210ENST00000600689 SERPINC1P01008 464 aa21.29■■□□□ 1
UPF1-210ENST00000600689 SLC3A2P08195 630 aaKnown RBP21.29■■□□□ 1
UPF1-210ENST00000600689 DCAF5Q96JK2 942 aa21.29■■□□□ 1
UPF1-210ENST00000600689 TIMM10P62072 90 aa21.28■■□□□ 1
UPF1-210ENST00000600689 TMCO3Q6UWJ1 677 aa21.28■■□□□ 1
UPF1-210ENST00000600689 PDILTQ8N807 584 aa21.28■■□□□ 1
UPF1-210ENST00000600689 DPF2Q92785 391 aa21.28■■□□□ 1
UPF1-210ENST00000600689 CFAP100Q494V2 611 aa21.28■■□□□ 1
UPF1-210ENST00000600689 FMR1NBQ8N0W7 255 aaPredicted RBP21.28■■□□□ 1
UPF1-210ENST00000600689 KIAA1468Q9P260 1216 aa21.28■■□□□ 1
UPF1-210ENST00000600689 NEURL1BA8MQ27 555 aa21.27■■□□□ 1
UPF1-210ENST00000600689 SMARCC2Q8TAQ2 1214 aa21.27■■□□□ 1
UPF1-210ENST00000600689 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.27■■□□□ 1
UPF1-210ENST00000600689 NRDCO43847 1150 aa21.27■■□□□ 1
UPF1-210ENST00000600689 PLA2G4AP47712 749 aa21.27■■□□□ 1
UPF1-210ENST00000600689 CABP4P57796 275 aa21.27■■□□□ 1
UPF1-210ENST00000600689 TEX35Q5T0J7 233 aa21.27■□□□□ 0.99
UPF1-210ENST00000600689 SNRKQ9NRH2 765 aa21.27■□□□□ 0.99
UPF1-210ENST00000600689 LRP10Q7Z4F1 713 aa21.26■□□□□ 0.99
UPF1-210ENST00000600689 KLHL34Q8N239 644 aa21.26■□□□□ 0.99
UPF1-210ENST00000600689 HDAC5Q9UQL6 1122 aa21.26■□□□□ 0.99
UPF1-210ENST00000600689 SNRPA1P09661 255 aaKnown RBP21.26■□□□□ 0.99
UPF1-210ENST00000600689 FANCCQ00597 558 aa21.26■□□□□ 0.99
UPF1-210ENST00000600689 NAA16Q6N069 864 aaPredicted RBP21.26■□□□□ 0.99
UPF1-210ENST00000600689 PRDM11Q9NQV5 511 aa21.26■□□□□ 0.99
UPF1-210ENST00000600689 PDIA3P30101 505 aaKnown RBP21.25■□□□□ 0.99
UPF1-210ENST00000600689 GCKRQ14397 625 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 ANKRD13DQ6ZTN6 518 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 H2AFXP16104 143 aaPredicted RBP21.25■□□□□ 0.99
UPF1-210ENST00000600689 ST5P78524 1137 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 USPL1Q5W0Q7 1092 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 UTYO14607 1347 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 TMEM232C9JQI7 657 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 E7EWF7 191 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 ZNF202O95125 648 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 RXRAP19793 462 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 TOM1L2Q6ZVM7 507 aa21.25■□□□□ 0.99
UPF1-210ENST00000600689 XIRP1Q702N8 1843 aaKnown RBP21.24■□□□□ 0.99
UPF1-210ENST00000600689 TSGA10IPQ3SY00 556 aa21.24■□□□□ 0.99
UPF1-210ENST00000600689 C8orf76Q96K31 380 aa21.24■□□□□ 0.99
UPF1-210ENST00000600689 ATP5JP18859 108 aa21.24■□□□□ 0.99
UPF1-210ENST00000600689 TPM4P67936 248 aa21.24■□□□□ 0.99
UPF1-210ENST00000600689 SYNE3Q6ZMZ3 975 aa21.24■□□□□ 0.99
UPF1-210ENST00000600689 CCDC150Q8NCX0 1101 aa21.24■□□□□ 0.99
UPF1-210ENST00000600689 METTL22Q9BUU2 404 aaPredicted RBP21.24■□□□□ 0.99
UPF1-210ENST00000600689 OSBPL5Q9H0X9 879 aaPredicted RBP21.24■□□□□ 0.99
UPF1-210ENST00000600689 CALCOCO1Q9P1Z2 691 aa21.24■□□□□ 0.99
UPF1-210ENST00000600689 FDPSP14324 419 aaKnown RBP21.23■□□□□ 0.99
UPF1-210ENST00000600689 UBASH3AP57075 661 aa21.23■□□□□ 0.99
UPF1-210ENST00000600689 AIFM3Q96NN9 605 aa21.23■□□□□ 0.99
UPF1-210ENST00000600689 ALDH8A1Q9H2A2 487 aaPredicted RBP21.23■□□□□ 0.99
UPF1-210ENST00000600689 LMTK3Q96Q04 1460 aa21.23■□□□□ 0.99
UPF1-210ENST00000600689 KIF2AO00139 706 aaPredicted RBP21.23■□□□□ 0.99
UPF1-210ENST00000600689 SPTLC2O15270 562 aa21.23■□□□□ 0.99
UPF1-210ENST00000600689 FANCGO15287 622 aa21.23■□□□□ 0.99
UPF1-210ENST00000600689 ETF1P62495 437 aaKnown RBP21.23■□□□□ 0.99
UPF1-210ENST00000600689 EVCP57679 992 aa21.23■□□□□ 0.99
UPF1-210ENST00000600689 PTPN12Q05209 780 aaKnown RBP21.23■□□□□ 0.99
UPF1-210ENST00000600689 ZNF335Q9H4Z2 1342 aaPredicted RBP21.22■□□□□ 0.99
UPF1-210ENST00000600689 CAPN2P17655 700 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms