RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 NLGN1Q8N2Q7 840 aa20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 APPBP2Q92624 585 aa20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 SETDB2Q96T68 719 aa20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 CDC5LQ99459 802 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 GZF1Q9H116 711 aaPredicted RBP20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 ALDH8A1Q9H2A2 487 aaPredicted RBP20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 ZBTB7AO95365 584 aa20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 GTF2E1P29083 439 aaPredicted RBP20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 MSL1Q68DK7 614 aa20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 MCTP1Q6DN14 999 aa20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 SH2B1Q9NRF2 756 aaPredicted RBP20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 CCDC24Q8N4L8 307 aa20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 NECAB1Q8N987 351 aa20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 CASZ1Q86V15 1759 aa20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 TAF1P21675 1872 aa20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 ADD2P35612 726 aa20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 RASGRF1Q13972 1273 aa20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 TTLL5Q6EMB2 1281 aa20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 NBPF5PQ86XG9 351 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-216ENST00000598201 BCAMP50895 628 aa20.29■□□□□ 0.84
SHKBP1-216ENST00000598201 TTF1Q15361 905 aaPredicted RBP20.29■□□□□ 0.84
SHKBP1-216ENST00000598201 SLC9C2Q5TAH2 1124 aa20.29■□□□□ 0.84
SHKBP1-216ENST00000598201 ANKRD18AQ8IVF6 992 aa20.29■□□□□ 0.84
SHKBP1-216ENST00000598201 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.29■□□□□ 0.845e-7■■■■□ 23.7
SHKBP1-216ENST00000598201 MTFR1LQ9H019 292 aa20.29■□□□□ 0.84
SHKBP1-216ENST00000598201 MYH7P12883 1935 aa20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 WTIPA6NIX2 430 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 GOLGA6L22H0YM25 854 aa20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 IDH1O75874 414 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 SPATA5Q8NB90 893 aa20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 NYXQ9GZU5 481 aa20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 COL24A1Q17RW2 1714 aa20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 MYO5AQ9Y4I1 1855 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 ANKRD1Q15327 319 aa20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 CELF1Q92879 486 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 SMC3Q9UQE7 1217 aa20.28■□□□□ 0.84
SHKBP1-216ENST00000598201 GPAA1O43292 621 aa20.27■□□□□ 0.84
SHKBP1-216ENST00000598201 WWC3Q9ULE0 1092 aa20.27■□□□□ 0.84
SHKBP1-216ENST00000598201 ATF5Q9Y2D1 282 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-216ENST00000598201 PTMSP20962 102 aa20.26■□□□□ 0.83
SHKBP1-216ENST00000598201 TM4SF1P30408 202 aa20.26■□□□□ 0.83
SHKBP1-216ENST00000598201 BSDC1Q9NW68 430 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-216ENST00000598201 PDE6AP16499 860 aa20.26■□□□□ 0.83
SHKBP1-216ENST00000598201 NFIXQ14938 502 aa20.26■□□□□ 0.83
SHKBP1-216ENST00000598201 ZSCAN25Q6NSZ9 544 aa20.26■□□□□ 0.83
SHKBP1-216ENST00000598201 LMBRD1Q9NUN5 540 aa20.26■□□□□ 0.83
SHKBP1-216ENST00000598201 ZNF532Q9HCE3 1301 aa20.26■□□□□ 0.83
SHKBP1-216ENST00000598201 TCRBV5S4A2TA0A5A2 114 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 E7EWF7 191 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 GJB2P29033 226 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 UBE3CQ15386 1083 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 TPTE2Q6XPS3 522 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 Q6ZUG5 572 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 LRRC2Q9BYS8 371 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 MINPP1Q9UNW1 487 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 FGAP02671 866 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 SYT1P21579 422 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 SKOR2Q2VWA4 1001 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 NLRP3Q96P20 1036 aa20.25■□□□□ 0.83
SHKBP1-216ENST00000598201 MMP10P09238 476 aa20.24■□□□□ 0.83
SHKBP1-216ENST00000598201 WDR33Q9C0J8 1336 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-216ENST00000598201 LAMA4Q16363 1823 aa20.24■□□□□ 0.83
SHKBP1-216ENST00000598201 DHX32Q7L7V1 743 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-216ENST00000598201 HAND2P61296 217 aa20.23■□□□□ 0.83
SHKBP1-216ENST00000598201 EXOSC10Q01780 885 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-216ENST00000598201 STK3Q13188 491 aa20.23■□□□□ 0.83
SHKBP1-216ENST00000598201 A0A1B0GUL6 1792 aa20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 STX6O43752 255 aa20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 PRPF40AO75400 957 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 HMGB1P09429 215 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 SPON1Q9HCB6 807 aa20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 CTNNA3Q9UI47 895 aa20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 IQSEC3Q9UPP2 1182 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 GYG1P46976 350 aa20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 RPS8P62241 208 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 DDR1Q08345 913 aa20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 BRF1Q92994 677 aa20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 PARP3Q9Y6F1 533 aa20.22■□□□□ 0.83
SHKBP1-216ENST00000598201 POLRMTO00411 1230 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-216ENST00000598201 POLD1P28340 1107 aa20.21■□□□□ 0.83
SHKBP1-216ENST00000598201 FOXD4L6Q3SYB3 417 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-216ENST00000598201 FOXD4L3Q6VB84 417 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-216ENST00000598201 MAGEB6Q8N7X4 407 aa20.21■□□□□ 0.83
SHKBP1-216ENST00000598201 DDX49Q9Y6V7 483 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-216ENST00000598201 CARMIL3Q8ND23 1372 aa20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 ZNF804BA4D1E1 1349 aa20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 ZSCAN22P10073 491 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 UBE4AQ14139 1066 aa20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 IMMTQ16891 758 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 KLHL40Q2TBA0 621 aa20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 DOCK2Q92608 1830 aa20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 SERPINB2P05120 415 aa20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 MAP3K12Q12852 859 aa20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 CHST3Q7LGC8 479 aa20.2■□□□□ 0.82
SHKBP1-216ENST00000598201 TNRC6CQ9HCJ0 1690 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-216ENST00000598201 PTGER2P43116 358 aa20.19■□□□□ 0.82
SHKBP1-216ENST00000598201 SGIP1Q9BQI5 828 aa20.19■□□□□ 0.82
SHKBP1-216ENST00000598201 GTF3C6Q969F1 213 aa20.18■□□□□ 0.82
SHKBP1-216ENST00000598201 STRBPQ96SI9 672 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms