RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 CEP85Q6P2H3 762 aa14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 MOB2Q70IA6 237 aa14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 SP8Q8IXZ3 490 aa14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 ANKRD44Q8N8A2 993 aa14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 TMX4Q9H1E5 349 aaPredicted RBP14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 RWDD1Q9H446 243 aaPredicted RBP14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 BICC1Q9H694 974 aaKnown RBP14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 PTPN22Q9Y2R2 807 aa14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 PCDHB15Q9Y5E8 787 aa14.97□□□□□ -0.01
SHKBP1-213ENST00000597325 KIF4BQ2VIQ3 1234 aa14.96□□□□□ -0.01
SHKBP1-213ENST00000597325 DDX60Q8IY21 1712 aaKnown RBP14.96□□□□□ -0.01
SHKBP1-213ENST00000597325 MPNDQ8N594 471 aa14.96□□□□□ -0.01
SHKBP1-213ENST00000597325 CHMP3Q9Y3E7 222 aa14.96□□□□□ -0.01
SHKBP1-213ENST00000597325 LAMA2P24043 3122 aaKnown RBP14.96□□□□□ -0.02
SHKBP1-213ENST00000597325 PDE8AO60658 829 aa14.95□□□□□ -0.02
SHKBP1-213ENST00000597325 B4GALNT3Q6L9W6 998 aa14.95□□□□□ -0.02
SHKBP1-213ENST00000597325 PLA2G12BQ9BX93 195 aa14.95□□□□□ -0.02
SHKBP1-213ENST00000597325 MYH3P11055 1940 aa14.95□□□□□ -0.02
SHKBP1-213ENST00000597325 RTL9Q8NET4 1388 aa14.95□□□□□ -0.02
SHKBP1-213ENST00000597325 SRGAP3O43295 1099 aa14.94□□□□□ -0.02
SHKBP1-213ENST00000597325 CTSWP56202 376 aa14.94□□□□□ -0.02
SHKBP1-213ENST00000597325 SREBF2Q12772 1141 aa14.94□□□□□ -0.02
SHKBP1-213ENST00000597325 HDAC1Q13547 482 aaPredicted RBP14.94□□□□□ -0.02
SHKBP1-213ENST00000597325 UBE2Q2LH0YL09 131 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 BBOX1O75936 387 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 HCLS1P14317 486 aaPredicted RBP14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 FOXO4P98177 505 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 ATP8B2P98198 1209 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 MTX1Q13505 466 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 RABL6Q3YEC7 729 aaPredicted RBP14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 LMBR1LQ6UX01 489 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 KAZALD1Q96I82 304 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 ZNF333Q96JL9 665 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 KCNQ5Q9NR82 932 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 PRUNE2Q8WUY3 3088 aa14.93□□□□□ -0.02
SHKBP1-213ENST00000597325 ZNF609O15014 1411 aa14.92□□□□□ -0.02
SHKBP1-213ENST00000597325 EPHA10Q5JZY3 1008 aa14.92□□□□□ -0.02
SHKBP1-213ENST00000597325 ANGEL2Q5VTE6 544 aaKnown RBP14.92□□□□□ -0.02
SHKBP1-213ENST00000597325 NLRP3Q96P20 1036 aa14.92□□□□□ -0.02
SHKBP1-213ENST00000597325 COL25A1Q9BXS0 654 aaPredicted RBP14.92□□□□□ -0.02
SHKBP1-213ENST00000597325 LRRC37AA6NMS7 1700 aa14.92□□□□□ -0.02
SHKBP1-213ENST00000597325 PNMA6EA0A0J9YXQ4 647 aa14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 CAP1Q01518 475 aa14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 MKRN3Q13064 507 aaKnown RBP14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 CCDC152Q4G0S7 254 aa14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 CENPQQ7L2Z9 268 aaPredicted RBP14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 SIRT2Q8IXJ6 389 aa14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 SSH3Q8TE77 659 aa14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 DBNDD1Q9H9R9 158 aa14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 SCN9AQ15858 1988 aa14.91□□□□□ -0.02
SHKBP1-213ENST00000597325 ALDH1A1P00352 501 aa14.9□□□□□ -0.02
SHKBP1-213ENST00000597325 IFIT5Q13325 482 aaKnown RBP14.9□□□□□ -0.02
SHKBP1-213ENST00000597325 SCARF1Q14162 830 aa14.9□□□□□ -0.02
SHKBP1-213ENST00000597325 CCDC57Q2TAC2 916 aa14.9□□□□□ -0.02
SHKBP1-213ENST00000597325 TAF7LQ5H9L4 462 aa14.9□□□□□ -0.02
SHKBP1-213ENST00000597325 SLC10A5Q5PT55 438 aa14.9□□□□□ -0.02
SHKBP1-213ENST00000597325 TMEM106CQ9BVX2 250 aa14.9□□□□□ -0.02
SHKBP1-213ENST00000597325 SOX1O00570 391 aaPredicted RBP14.89□□□□□ -0.03
SHKBP1-213ENST00000597325 IGHDP01880 384 aa14.89□□□□□ -0.03
SHKBP1-213ENST00000597325 VIL1P09327 827 aaKnown RBP14.89□□□□□ -0.03
SHKBP1-213ENST00000597325 ZNF280AP59817 542 aaPredicted RBP14.89□□□□□ -0.03
SHKBP1-213ENST00000597325 POLA2Q14181 598 aa14.89□□□□□ -0.03
SHKBP1-213ENST00000597325 TTLL11Q8NHH1 800 aa14.89□□□□□ -0.03
SHKBP1-213ENST00000597325 CCDC85AQ96PX6 553 aaPredicted RBP14.89□□□□□ -0.03
SHKBP1-213ENST00000597325 TAF1P21675 1872 aa14.89□□□□□ -0.03
SHKBP1-213ENST00000597325 LAMB1P07942 1786 aa14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 ANKRD18BA2A2Z9 1011 aa14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 CSF1RP07333 972 aa14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 OS9Q13438 667 aaPredicted RBP14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 WASHC4Q2M389 1173 aa14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 HSP90AB4PQ58FF6 505 aa14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 CD99L2Q8TCZ2 262 aa14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 ERO1AQ96HE7 468 aa14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 GREM2Q9H772 168 aa14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 ZBTB47Q9UFB7 747 aaPredicted RBP14.88□□□□□ -0.03
SHKBP1-213ENST00000597325 ITGA6P23229 1130 aa14.87□□□□□ -0.03
SHKBP1-213ENST00000597325 SF3B3Q15393 1217 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-213ENST00000597325 IFNL1Q8IU54 200 aa14.87□□□□□ -0.03
SHKBP1-213ENST00000597325 LRCH3Q96II8 777 aa14.87□□□□□ -0.03
SHKBP1-213ENST00000597325 SCAF8Q9UPN6 1271 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-213ENST00000597325 ECE2O60344 883 aa14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 SURF6O75683 361 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 GRAPQ13588 217 aa14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 PRAMEF18Q5VWM3 479 aa14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 SPRYD7Q5W111 196 aa14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 GRAPLQ8TC17 118 aaPredicted RBP14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 CDC5LQ99459 802 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 DCTPP1Q9H773 170 aa14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 EFCC1Q9HA90 598 aa14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 EXOC6BQ9Y2D4 811 aa14.86□□□□□ -0.03
SHKBP1-213ENST00000597325 A0A1W2PPC1 479 aa14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 RFX5P48382 616 aaPredicted RBP14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 PTPN12Q05209 780 aaKnown RBP14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 G3BP1Q13283 466 aaKnown RBP eCLIP14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 DDX46Q7L014 1031 aaKnown RBP14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 ERC1Q8IUD2 1116 aa14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 SMC5Q8IY18 1101 aa14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 SIL1Q9H173 461 aa14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 COPRSQ9NQ92 184 aa14.85□□□□□ -0.03
SHKBP1-213ENST00000597325 POLLQ9UGP5 575 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms