RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ATP2B3Q16720 1220 aa13.86□□□□□ -0.19
VRK3-210ENST00000596121 SIRT2Q8IXJ6 389 aa13.86□□□□□ -0.19
VRK3-210ENST00000596121 PCDHAC2Q9Y5I4 1007 aa13.86□□□□□ -0.19
VRK3-210ENST00000596121 FAM205AQ6ZU69 1335 aa13.86□□□□□ -0.19
VRK3-210ENST00000596121 TIMM10P62072 90 aa13.85□□□□□ -0.19
VRK3-210ENST00000596121 KIF4BQ2VIQ3 1234 aa13.85□□□□□ -0.19
VRK3-210ENST00000596121 KIAA0825Q8IV33 1275 aa13.85□□□□□ -0.19
VRK3-210ENST00000596121 DNAJC5GQ8N7S2 189 aa13.85□□□□□ -0.19
VRK3-210ENST00000596121 GLIS2Q9BZE0 524 aaPredicted RBP13.85□□□□□ -0.19
VRK3-210ENST00000596121 MYOZ2Q9NPC6 264 aa13.85□□□□□ -0.19
VRK3-210ENST00000596121 DDX19BQ9UMR2 479 aa13.85□□□□□ -0.19
VRK3-210ENST00000596121 IFIT1P09914 478 aaKnown RBP13.84□□□□□ -0.19
VRK3-210ENST00000596121 SLC5A1P13866 664 aa13.84□□□□□ -0.19
VRK3-210ENST00000596121 SCARF1Q14162 830 aa13.84□□□□□ -0.19
VRK3-210ENST00000596121 NBPF9Q3BBW0 867 aa13.84□□□□□ -0.19
VRK3-210ENST00000596121 ZC3H15Q8WU90 426 aaKnown RBP13.84□□□□□ -0.19
VRK3-210ENST00000596121 ZBED3Q96IU2 234 aaPredicted RBP13.84□□□□□ -0.19
VRK3-210ENST00000596121 NOP58Q9Y2X3 529 aaKnown RBP13.84□□□□□ -0.19
VRK3-210ENST00000596121 AOX1Q06278 1338 aa13.84□□□□□ -0.19
VRK3-210ENST00000596121 COL1A1P02452 1464 aaPredicted RBP13.83□□□□□ -0.2
VRK3-210ENST00000596121 F8W031 263 aaPredicted RBP13.83□□□□□ -0.2
VRK3-210ENST00000596121 SURF6O75683 361 aaKnown RBP13.83□□□□□ -0.2
VRK3-210ENST00000596121 PHKA1P46020 1223 aa13.83□□□□□ -0.2
VRK3-210ENST00000596121 G3BP1Q13283 466 aaKnown RBP eCLIP13.83□□□□□ -0.2
VRK3-210ENST00000596121 CAVIN4Q5BKX8 364 aa13.83□□□□□ -0.2
VRK3-210ENST00000596121 SCAF8Q9UPN6 1271 aaKnown RBP13.83□□□□□ -0.2
VRK3-210ENST00000596121 MYO3BQ8WXR4 1341 aa13.83□□□□□ -0.2
VRK3-210ENST00000596121 A0A1B0GUL7 405 aa13.82□□□□□ -0.2
VRK3-210ENST00000596121 RRP1P56182 461 aaKnown RBP13.82□□□□□ -0.2
VRK3-210ENST00000596121 FKBP1AP62942 108 aaKnown RBP13.82□□□□□ -0.2
VRK3-210ENST00000596121 CHAF1AQ13111 956 aaPredicted RBP13.82□□□□□ -0.2
VRK3-210ENST00000596121 MFSD14BQ5SR56 506 aa13.82□□□□□ -0.2
VRK3-210ENST00000596121 CST9Q5W186 159 aa13.82□□□□□ -0.2
VRK3-210ENST00000596121 USP48Q86UV5 1035 aa13.82□□□□□ -0.2
VRK3-210ENST00000596121 VPS37DQ86XT2 251 aa13.82□□□□□ -0.2
VRK3-210ENST00000596121 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.82□□□□□ -0.2
VRK3-210ENST00000596121 POLR2AP24928 1970 aaKnown RBP13.82□□□□□ -0.2
VRK3-210ENST00000596121 ADM5C9JUS6 153 aa13.81□□□□□ -0.2
VRK3-210ENST00000596121 WNT10BO00744 389 aa13.81□□□□□ -0.2
VRK3-210ENST00000596121 ANGEL2Q5VTE6 544 aaKnown RBP13.81□□□□□ -0.2
VRK3-210ENST00000596121 XAGE2Q96GT9 111 aa13.81□□□□□ -0.2
VRK3-210ENST00000596121 GGA3Q9NZ52 723 aa13.81□□□□□ -0.2
VRK3-210ENST00000596121 CCDC102BQ68D86 513 aa13.8□□□□□ -0.2
VRK3-210ENST00000596121 CDC37L1Q7L3B6 337 aa13.8□□□□□ -0.2
VRK3-210ENST00000596121 OGFOD1Q8N543 542 aa13.8□□□□□ -0.2
VRK3-210ENST00000596121 EXOC6BQ9Y2D4 811 aa13.8□□□□□ -0.2
VRK3-210ENST00000596121 KRT26Q7Z3Y9 468 aa13.79□□□□□ -0.2
VRK3-210ENST00000596121 RPAP2Q8IXW5 612 aaPredicted RBP13.79□□□□□ -0.2
VRK3-210ENST00000596121 PRMT6Q96LA8 375 aaPredicted RBP13.79□□□□□ -0.2
VRK3-210ENST00000596121 NEUROD6Q96NK8 337 aa13.79□□□□□ -0.2
VRK3-210ENST00000596121 CREBZFQ9NS37 354 aa13.79□□□□□ -0.2
VRK3-210ENST00000596121 TTF2Q9UNY4 1162 aaKnown RBP13.79□□□□□ -0.2
VRK3-210ENST00000596121 AKAP2Q9Y2D5 859 aa13.79□□□□□ -0.2
VRK3-210ENST00000596121 TMEM88BA6NKF7 163 aa13.78□□□□□ -0.2
VRK3-210ENST00000596121 FRAT2O75474 233 aaPredicted RBP13.78□□□□□ -0.2
VRK3-210ENST00000596121 OS9Q13438 667 aaPredicted RBP13.78□□□□□ -0.2
VRK3-210ENST00000596121 RASGRF1Q13972 1273 aa13.78□□□□□ -0.2
VRK3-210ENST00000596121 CFAP100Q494V2 611 aa13.78□□□□□ -0.2
VRK3-210ENST00000596121 TNNI3KQ59H18 835 aa13.78□□□□□ -0.2
VRK3-210ENST00000596121 MTMR14Q8NCE2 650 aa13.78□□□□□ -0.2
VRK3-210ENST00000596121 DCPSQ96C86 337 aaKnown RBP13.78□□□□□ -0.2
VRK3-210ENST00000596121 GPR108Q9NPR9 543 aa13.78□□□□□ -0.2
VRK3-210ENST00000596121 TLR7Q9NYK1 1049 aaKnown RBP13.78□□□□□ -0.2
VRK3-210ENST00000596121 HDAC9Q9UKV0 1011 aa13.78□□□□□ -0.2
VRK3-210ENST00000596121 FPGT-TNNI3KV9GXZ4 949 aa13.78□□□□□ -0.2
VRK3-210ENST00000596121 ZBTB22O15209 634 aa13.77□□□□□ -0.21
VRK3-210ENST00000596121 CELF2O95319 508 aaKnown RBP13.77□□□□□ -0.21
VRK3-210ENST00000596121 MMP14P50281 582 aa13.77□□□□□ -0.21
VRK3-210ENST00000596121 DLGAP5Q15398 846 aa13.77□□□□□ -0.21
VRK3-210ENST00000596121 PRAMEF18Q5VWM3 479 aa13.77□□□□□ -0.21
VRK3-210ENST00000596121 PI16Q6UXB8 463 aa13.77□□□□□ -0.21
VRK3-210ENST00000596121 ARAP2Q8WZ64 1704 aa13.77□□□□□ -0.21
VRK3-210ENST00000596121 EAF2Q96CJ1 260 aaPredicted RBP13.77□□□□□ -0.21
VRK3-210ENST00000596121 CRBNQ96SW2 442 aa13.77□□□□□ -0.21
VRK3-210ENST00000596121 DBNDD2Q9BQY9 259 aa13.77□□□□□ -0.21
VRK3-210ENST00000596121 SPDYE2BA6NHP3 402 aa13.76□□□□□ -0.21
VRK3-210ENST00000596121 SPDYE6P0CI01 402 aa13.76□□□□□ -0.21
VRK3-210ENST00000596121 CRKP46108 304 aa13.76□□□□□ -0.21
VRK3-210ENST00000596121 TBC1D22AQ8WUA7 517 aa13.76□□□□□ -0.21
VRK3-210ENST00000596121 KLRG1Q96E93 195 aa13.76□□□□□ -0.21
VRK3-210ENST00000596121 CCDC8Q9H0W5 538 aaPredicted RBP13.76□□□□□ -0.21
VRK3-210ENST00000596121 GNL3LQ9NVN8 582 aaKnown RBP13.76□□□□□ -0.21
VRK3-210ENST00000596121 HMG20BQ9P0W2 317 aa13.76□□□□□ -0.21
VRK3-210ENST00000596121 DBNLQ9UJU6 430 aaKnown RBP13.76□□□□□ -0.21
VRK3-210ENST00000596121 SERPINA10Q9UK55 444 aa13.76□□□□□ -0.21
VRK3-210ENST00000596121 PCDHB15Q9Y5E8 787 aa13.76□□□□□ -0.21
VRK3-210ENST00000596121 PITPNM2Q9BZ72 1349 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 CLRN2A0PK11 232 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 SEMA3EO15041 775 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 PRDX5P30044 214 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 SULF1Q8IWU6 871 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 WDR66Q8TBY9 1149 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 RHPN1Q8TCX5 695 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 CDCA5Q96FF9 252 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 ZNF408Q9H9D4 720 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 IL1RAPL2Q9NP60 686 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 MKRN1Q9UHC7 482 aaKnown RBP13.75□□□□□ -0.21
VRK3-210ENST00000596121 DENND2AQ9ULE3 1009 aa13.75□□□□□ -0.21
VRK3-210ENST00000596121 SALL1Q9NSC2 1324 aa13.74□□□□□ -0.21
VRK3-210ENST00000596121 APBB1O00213 710 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms