RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.14□□□□□ -0.47
RFFL-212ENST00000584655 NKX1-1Q15270 411 aaPredicted RBP12.14□□□□□ -0.47
RFFL-212ENST00000584655 TMEM63CQ9P1W3 806 aa12.14□□□□□ -0.47
RFFL-212ENST00000584655 COL15A1P39059 1388 aa12.14□□□□□ -0.47
RFFL-212ENST00000584655 ZNF609O15014 1411 aa12.14□□□□□ -0.47
RFFL-212ENST00000584655 BIN1O00499 593 aa12.14□□□□□ -0.47
RFFL-212ENST00000584655 IFIT3O14879 490 aaKnown RBP12.14□□□□□ -0.47
RFFL-212ENST00000584655 PDE6AP16499 860 aa12.14□□□□□ -0.47
RFFL-212ENST00000584655 RABL6Q3YEC7 729 aaPredicted RBP12.14□□□□□ -0.47
RFFL-212ENST00000584655 LCORLQ8N3X6 602 aa12.14□□□□□ -0.47
RFFL-212ENST00000584655 CNBD1Q8NA66 436 aa12.14□□□□□ -0.47
RFFL-212ENST00000584655 PDGFDQ9GZP0 370 aaPredicted RBP12.14□□□□□ -0.47
RFFL-212ENST00000584655 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.14□□□□□ -0.47
RFFL-212ENST00000584655 VAT1LQ9HCJ6 419 aa12.14□□□□□ -0.47
RFFL-212ENST00000584655 MARCKSP29966 332 aaPredicted RBP12.13□□□□□ -0.47
RFFL-212ENST00000584655 TPTE2Q6XPS3 522 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 CPVLQ9H3G5 476 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 GRPEL1Q9HAV7 217 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 RPS6KB1P23443 525 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 RIPOR2Q9Y4F9 1068 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 NMT2O60551 498 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 SCNN1DP51172 638 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 MAP3K12Q12852 859 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 CAVIN4Q5BKX8 364 aa12.13□□□□□ -0.47
RFFL-212ENST00000584655 HIP1O00291 1037 aa12.12□□□□□ -0.47
RFFL-212ENST00000584655 CYP2D6P10635 497 aa12.12□□□□□ -0.47
RFFL-212ENST00000584655 CACNB3P54284 484 aa12.12□□□□□ -0.47
RFFL-212ENST00000584655 RPS8P62241 208 aaKnown RBP12.12□□□□□ -0.47
RFFL-212ENST00000584655 PUM3Q15397 648 aaKnown RBP12.12□□□□□ -0.47
RFFL-212ENST00000584655 U3KPZ7 1027 aaPredicted RBP12.12□□□□□ -0.47
RFFL-212ENST00000584655 DZIP1Q86YF9 867 aaKnown RBP12.12□□□□□ -0.47
RFFL-212ENST00000584655 NCAPD2Q15021 1401 aa12.12□□□□□ -0.47
RFFL-212ENST00000584655 ME1P48163 572 aa12.12□□□□□ -0.47
RFFL-212ENST00000584655 NASPP49321 788 aaPredicted RBP12.12□□□□□ -0.47
RFFL-212ENST00000584655 DEFB132Q7Z7B7 95 aa12.12□□□□□ -0.47
RFFL-212ENST00000584655 CDC5LQ99459 802 aaKnown RBP12.12□□□□□ -0.47
RFFL-212ENST00000584655 PTPN21Q16825 1174 aa12.11□□□□□ -0.47
RFFL-212ENST00000584655 ZSCAN23Q3MJ62 389 aa12.11□□□□□ -0.47
RFFL-212ENST00000584655 TMEM67Q5HYA8 995 aa12.11□□□□□ -0.47
RFFL-212ENST00000584655 PTPDC1A2A3K4 754 aa12.11□□□□□ -0.47
RFFL-212ENST00000584655 UFL1O94874 794 aa12.11□□□□□ -0.47
RFFL-212ENST00000584655 SCRN1Q12765 414 aa12.11□□□□□ -0.47
RFFL-212ENST00000584655 TOB2Q14106 344 aaPredicted RBP12.11□□□□□ -0.47
RFFL-212ENST00000584655 LMBRD1Q9NUN5 540 aa12.11□□□□□ -0.47
RFFL-212ENST00000584655 CENPFP49454 3210 aa12.11□□□□□ -0.47
RFFL-212ENST00000584655 ZSCAN22P10073 491 aaPredicted RBP12.11□□□□□ -0.47
RFFL-212ENST00000584655 WDR33Q9C0J8 1336 aaKnown RBP12.1□□□□□ -0.47
RFFL-212ENST00000584655 PDILTQ8N807 584 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 SMARCC1Q92922 1105 aaPredicted RBP12.1□□□□□ -0.47
RFFL-212ENST00000584655 SLC26A6Q9BXS9 759 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 FAM196BA6NMK8 535 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 EN1Q05925 392 aaPredicted RBP12.1□□□□□ -0.47
RFFL-212ENST00000584655 SLC44A5Q8NCS7 719 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 SPATA32Q96LK8 384 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 ORC3Q9UBD5 711 aaPredicted RBP12.1□□□□□ -0.47
RFFL-212ENST00000584655 ADGRA1Q86SQ6 560 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 LPIN2Q92539 896 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 STX8Q9UNK0 236 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 KCNJ14Q9UNX9 436 aa12.1□□□□□ -0.47
RFFL-212ENST00000584655 ECM2O94769 699 aaPredicted RBP12.09□□□□□ -0.47
RFFL-212ENST00000584655 TCP10Q12799 353 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 SF3B2Q13435 895 aaKnown RBP12.09□□□□□ -0.47
RFFL-212ENST00000584655 NAA16Q6N069 864 aaPredicted RBP12.09□□□□□ -0.47
RFFL-212ENST00000584655 TRMT1LQ7Z2T5 733 aaKnown RBP12.09□□□□□ -0.47
RFFL-212ENST00000584655 KRT27Q7Z3Y8 459 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 TBC1D10CQ8IV04 446 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 MAPKAPK5Q8IW41 473 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 DRC7Q8IY82 874 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 USP5P45974 858 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 ST3GAL1Q11201 340 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 ZSCAN29Q8IWY8 852 aaPredicted RBP12.09□□□□□ -0.47
RFFL-212ENST00000584655 MINPP1Q9UNW1 487 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 BCL9O00512 1426 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 GRIK5Q16478 980 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 RASGRP2Q7LDG7 609 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 HOMER1Q86YM7 354 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 DYNLL2Q96FJ2 89 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 RBSNQ9H1K0 784 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 ZSWIM6Q9HCJ5 1215 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 MCM9Q9NXL9 1143 aa12.09□□□□□ -0.47
RFFL-212ENST00000584655 USP17L12C9JPN9 530 aa12.08□□□□□ -0.47
RFFL-212ENST00000584655 USP17L21D6R901 530 aa12.08□□□□□ -0.47
RFFL-212ENST00000584655 F13A1P00488 732 aa12.08□□□□□ -0.47
RFFL-212ENST00000584655 CLEC10AQ8IUN9 316 aa12.08□□□□□ -0.47
RFFL-212ENST00000584655 ZNF34Q8IZ26 560 aa12.08□□□□□ -0.47
RFFL-212ENST00000584655 SLIT3O75094 1523 aa12.08□□□□□ -0.47
RFFL-212ENST00000584655 DHX32Q7L7V1 743 aaKnown RBP12.08□□□□□ -0.48
RFFL-212ENST00000584655 APPBP2Q92624 585 aa12.08□□□□□ -0.48
RFFL-212ENST00000584655 CWC22Q9HCG8 908 aaKnown RBP12.08□□□□□ -0.48
RFFL-212ENST00000584655 USP25Q9UHP3 1055 aa12.08□□□□□ -0.48
RFFL-212ENST00000584655 RGPD1P0DJD0 1748 aa12.08□□□□□ -0.48
RFFL-212ENST00000584655 ZMYM1Q5SVZ6 1142 aa12.08□□□□□ -0.48
RFFL-212ENST00000584655 DBNDD1Q9H9R9 158 aa12.08□□□□□ -0.48
RFFL-212ENST00000584655 JCADQ9P266 1359 aa12.08□□□□□ -0.48
RFFL-212ENST00000584655 NTSR2O95665 410 aa12.08□□□□□ -0.48
RFFL-212ENST00000584655 CCDC69A6NI79 296 aa12.07□□□□□ -0.48
RFFL-212ENST00000584655 LIG1P18858 919 aa12.07□□□□□ -0.48
RFFL-212ENST00000584655 CHRNA5P30532 468 aa12.07□□□□□ -0.48
RFFL-212ENST00000584655 GTF2IP78347 998 aa12.07□□□□□ -0.48
RFFL-212ENST00000584655 C17orf53Q8N3J3 647 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms