RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	PLBD2	Q8NHP8	589 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	KLHL42	Q9P2K6	505 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	DBNL	Q9UJU6	430 aa	Known RBP	13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	TBC1D2B	Q9UPU7	963 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	CYP46A1	Q9Y6A2	500 aa		13.59	□□□□□ -0.23
CDK5RAP3-231	ENST00000584063	KIF20A	O95235	890 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	MAMSTR	Q6ZN01	415 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	NRBP1	Q9UHY1	535 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	SLC20A2	Q08357	652 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	LRMP	Q12912	555 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ZKSCAN8	Q15776	578 aa	Predicted RBP	13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	DRC7	Q8IY82	874 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	MARCH10	Q8NA82	808 aa	Predicted RBP	13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	DBNDD2	Q9BQY9	259 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	KCNF1	Q9H3M0	494 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	C5	P01031	1676 aa		13.58	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.57	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ZSWIM6	Q9HCJ5	1215 aa		13.57	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	PTGS1	P23219	599 aa		13.57	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	LMBR1L	Q6UX01	489 aa		13.57	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ERCC4	Q92889	916 aa	Predicted RBP	13.57	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	SLC4A9	Q96Q91	983 aa		13.57	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	SCN11A	Q9UI33	1791 aa		13.57	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	JAK2	O60674	1132 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ZNF710	Q8N1W2	664 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	GPATCH3	Q96I76	525 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	FRMD4B	Q9Y2L6	1034 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	DYNC1I1	O14576	645 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ATP6V1A	P38606	617 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	PTPN12	Q05209	780 aa	Known RBP	13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	PIBF1	Q8WXW3	757 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	FAM89A	Q96GI7	184 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ZBTB1	Q9Y2K1	713 aa		13.56	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	MCM5	P33992	734 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	KIF6	Q6ZMV9	814 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ERC1	Q8IUD2	1116 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	SYNE4	Q8N205	404 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	RUFY2	Q8WXA3	655 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	MAP4K1	Q92918	833 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ZNF594	Q96JF6	807 aa	Predicted RBP	13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	DACT1	Q9NYF0	836 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	NUB1	Q9Y5A7	615 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	GOLGA6L4	A6NEF3	574 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ZKSCAN1	P17029	563 aa	Predicted RBP	13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	RFX5	P48382	616 aa	Predicted RBP	13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	TDO2	P48775	406 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	CWC25	Q9NXE8	425 aa	Predicted RBP	13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	USP21	Q9UK80	565 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	UTY	O14607	1347 aa		13.55	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	NAA30	Q147X3	362 aa	Predicted RBP	13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	SH3BP5	O60239	455 aa		13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	HLF	Q16534	295 aa		13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	VPS53	Q5VIR6	699 aa		13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	SMIM5	Q71RC9	77 aa		13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	TOB2	Q14106	344 aa	Predicted RBP	13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	TNNI3K	Q59H18	835 aa		13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	PTF1A	Q7RTS3	328 aa		13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	FPGT-TNNI3K	V9GXZ4	949 aa		13.54	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	SPATA31A5	Q5VU36	1347 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	SPATA31A7	Q8IWB4	1347 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ABCC6	O95255	1503 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ERCC3	P19447	782 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	TIMM10	P62072	90 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	IRX5	P78411	483 aa	Predicted RBP	13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ANO6	Q4KMQ2	910 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	MYRIP	Q8NFW9	859 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	C16orf45	Q96MC5	204 aa	Predicted RBP	13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	COL14A1	Q05707	1796 aa	Known RBP	13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	CCT2	P78371	535 aa	Known RBP	13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	CCDC186	Q7Z3E2	898 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	FAM184A	Q8NB25	1140 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	FUCA2	Q9BTY2	467 aa		13.53	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	PKD1L3	Q7Z443	1732 aa		13.52	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	TAF5L	O75529	589 aa		13.52	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	GUCY1B3	Q02153	619 aa		13.52	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	BICD2	Q8TD16	824 aa		13.52	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	NEUROD6	Q96NK8	337 aa		13.52	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	ATP6V1D	Q9Y5K8	247 aa		13.52	□□□□□ -0.24
CDK5RAP3-231	ENST00000584063	MPHOSPH10	O00566	681 aa	Known RBP	13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	NR1I2	O75469	434 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TERF1	P54274	439 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	SETDB1	Q15047	1291 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	BLOC1S2	Q6QNY1	142 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CHST3	Q7LGC8	479 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TMEM87A	Q8NBN3	555 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	NUP62CL	Q9H1M0	184 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	DNAJC25	Q9H1X3	360 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	TNMD	Q9H2S6	317 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CEP83	Q9Y592	693 aa		13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	PARP4	Q9UKK3	1724 aa	Known RBP	13.52	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	SIPA1L3	O60292	1781 aa	Predicted RBP	13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	PLCH1	Q4KWH8	1693 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CREB3	O43889	395 aa		13.51	□□□□□ -0.25
CDK5RAP3-231	ENST00000584063	CCDC192	P0DO97	292 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms