RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	NRG1	Q02297	640 aa	Predicted RBP	7.15	□□□□□ -1.26
SS18-223	ENST00000583595	ADGRE1	Q14246	886 aa		7.15	□□□□□ -1.26
SS18-223	ENST00000583595	MBTPS1	Q14703	1052 aa		7.15	□□□□□ -1.26
SS18-223	ENST00000583595	ENOX2	Q16206	610 aa	Known RBP	7.15	□□□□□ -1.26
SS18-223	ENST00000583595	IL22RA1	Q8N6P7	574 aa		7.15	□□□□□ -1.26
SS18-223	ENST00000583595	PMFBP1	Q8TBY8	1022 aa		7.15	□□□□□ -1.26
SS18-223	ENST00000583595	HIRIP3	Q9BW71	556 aa	Predicted RBP	7.15	□□□□□ -1.26
SS18-223	ENST00000583595	SEMA6B	Q9H3T3	888 aa		7.15	□□□□□ -1.26
SS18-223	ENST00000583595	ELP3	Q9H9T3	547 aa		7.15	□□□□□ -1.26
SS18-223	ENST00000583595	TPSG1	Q9NRR2	321 aa		7.15	□□□□□ -1.26
SS18-223	ENST00000583595	TLDC2	A0PJX2	215 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	CYP2E1	P05181	493 aa	Predicted RBP	7.14	□□□□□ -1.27
SS18-223	ENST00000583595	RPLP1	P05386	114 aa	Known RBP	7.14	□□□□□ -1.27
SS18-223	ENST00000583595	CTSH	P09668	335 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	PDE12	Q6L8Q7	609 aa	Known RBP	7.14	□□□□□ -1.27
SS18-223	ENST00000583595	ZNF438	Q7Z4V0	828 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	ANKRD13A	Q8IZ07	590 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	ALKBH8	Q96BT7	664 aa	Known RBP	7.14	□□□□□ -1.27
SS18-223	ENST00000583595	SPACA7	Q96KW9	195 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	GML	Q99445	158 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	NLRP2	Q9NX02	1062 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	USP21	Q9UK80	565 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	TRIM33	Q9UPN9	1127 aa		7.14	□□□□□ -1.27
SS18-223	ENST00000583595	SBNO2	Q9Y2G9	1366 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	DEAF1	O75398	565 aa	Predicted RBP	7.13	□□□□□ -1.27
SS18-223	ENST00000583595	PCSK2	P16519	638 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	RACK1	P63244	317 aa	Known RBP	7.13	□□□□□ -1.27
SS18-223	ENST00000583595	C8orf34	Q49A92	452 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	ZNF394	Q53GI3	561 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	ALG1L	Q6GMV1	187 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	TXNRD3	Q86VQ6	643 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	GGNBP2	Q9H3C7	697 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	PIF1	Q9H611	641 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	TMEM63C	Q9P1W3	806 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	PCDHGB7	Q9Y5F8	929 aa		7.13	□□□□□ -1.27
SS18-223	ENST00000583595	PDGFA	P04085	211 aa		7.12	□□□□□ -1.27
SS18-223	ENST00000583595	MZF1	P28698	734 aa	Predicted RBP	7.12	□□□□□ -1.27
SS18-223	ENST00000583595	ATP11A	P98196	1134 aa		7.12	□□□□□ -1.27
SS18-223	ENST00000583595	RBL2	Q08999	1139 aa		7.12	□□□□□ -1.27
SS18-223	ENST00000583595	GNL2	Q13823	731 aa	Known RBP	7.12	□□□□□ -1.27
SS18-223	ENST00000583595	RSPO4	Q2I0M5	234 aa	Predicted RBP	7.12	□□□□□ -1.27
SS18-223	ENST00000583595	NCAPG2	Q86XI2	1143 aa		7.12	□□□□□ -1.27
SS18-223	ENST00000583595	TTC16	Q8NEE8	873 aa		7.12	□□□□□ -1.27
SS18-223	ENST00000583595	CNTN3	Q9P232	1028 aa		7.12	□□□□□ -1.27
SS18-223	ENST00000583595	INPP5F	Q9Y2H2	1132 aa		7.12	□□□□□ -1.27
SS18-223	ENST00000583595	AK5	Q9Y6K8	562 aa		7.12	□□□□□ -1.27
SS18-223	ENST00000583595	SMNDC1	O75940	238 aa	Known RBP eCLIP	7.11	□□□□□ -1.27
SS18-223	ENST00000583595	KIF4A	O95239	1232 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	GNA15	P30679	374 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	ITGAE	P38570	1179 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	ARID5A	Q03989	594 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	NKAPL	Q5M9Q1	402 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	CEP135	Q66GS9	1140 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	IGF2-AS	Q6U949	168 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	XKR5	Q6UX68	686 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	RASSF4	Q9H2L5	321 aa		7.11	□□□□□ -1.27
SS18-223	ENST00000583595	DDX41	Q9UJV9	622 aa	Known RBP	7.11	□□□□□ -1.27
SS18-223	ENST00000583595		A6NHS1	94 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	DLL1	O00548	723 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	ORC1	Q13415	861 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	GJD3	Q8N144	294 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	CACTIN-AS1	Q8N1I8	211 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	CEP120	Q8N960	986 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	C1orf127	Q8N9H9	656 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	CSRNP1	Q96S65	589 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	LACRT	Q9GZZ8	138 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	KANSL3	Q9P2N6	904 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	7.1	□□□□□ -1.27
SS18-223	ENST00000583595	PPME1	Q9Y570	386 aa		7.1	□□□□□ -1.27
SS18-223	ENST00000583595	CES1	P23141	567 aa		7.09	□□□□□ -1.27
SS18-223	ENST00000583595	ITGB7	P26010	798 aa		7.09	□□□□□ -1.27
SS18-223	ENST00000583595	IREB2	P48200	963 aa	Known RBP	7.09	□□□□□ -1.27
SS18-223	ENST00000583595	SETDB1	Q15047	1291 aa		7.09	□□□□□ -1.27
SS18-223	ENST00000583595	ZNF654	Q8IZM8	581 aa		7.09	□□□□□ -1.27
SS18-223	ENST00000583595	WFDC12	Q8WWY7	111 aa		7.09	□□□□□ -1.27
SS18-223	ENST00000583595	PBX4	Q9BYU1	374 aa		7.09	□□□□□ -1.27
SS18-223	ENST00000583595	MUC3B	Q9H195	1237 aa		7.09	□□□□□ -1.27
SS18-223	ENST00000583595	ZSWIM4	Q9H7M6	989 aa		7.09	□□□□□ -1.27
SS18-223	ENST00000583595	CWC22	Q9HCG8	908 aa	Known RBP	7.09	□□□□□ -1.27
SS18-223	ENST00000583595	SRA1	Q9HD15	236 aa	Known RBP	7.09	□□□□□ -1.27
SS18-223	ENST00000583595	TMA7	Q9Y2S6	64 aa	Known RBP	7.09	□□□□□ -1.27
SS18-223	ENST00000583595	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	7.09	□□□□□ -1.27
SS18-223	ENST00000583595	CDC27	P30260	824 aa		7.08	□□□□□ -1.28
SS18-223	ENST00000583595	MAP4K3	Q8IVH8	894 aa		7.08	□□□□□ -1.28
SS18-223	ENST00000583595	ARMC5	Q96C12	935 aa		7.08	□□□□□ -1.28
SS18-223	ENST00000583595	LINC01387	J3KSC0	135 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	EIF1AY	O14602	144 aa	Known RBP	7.07	□□□□□ -1.28
SS18-223	ENST00000583595	DYRK3	O43781	588 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	NOS3	P29474	1203 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	CDC25B	P30305	580 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	EGFLAM	Q63HQ2	1017 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	ADAMTSL4	Q6UY14	1074 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	USP48	Q86UV5	1035 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	TP53INP1	Q96A56	240 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	POP1	Q99575	1024 aa	Known RBP	7.07	□□□□□ -1.28
SS18-223	ENST00000583595	SALL4	Q9UJQ4	1053 aa		7.07	□□□□□ -1.28
SS18-223	ENST00000583595	ACPP	P15309	386 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	USP5	P45974	858 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	SDE2	Q6IQ49	451 aa		7.06	□□□□□ -1.28
SS18-223	ENST00000583595	TXNDC11	Q6PKC3	985 aa		7.06	□□□□□ -1.28

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