RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PARP3Q9Y6F1 533 aa12.65□□□□□ -0.38
SS18-217ENST00000580958 CHD4Q14839 1912 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 M0R2C6 588 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 MMP10P09238 476 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 GYG1P46976 350 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 MNX1P50219 401 aaPredicted RBP12.64□□□□□ -0.39
SS18-217ENST00000580958 RASGRF1Q13972 1273 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 TTF1Q15361 905 aaPredicted RBP12.64□□□□□ -0.39
SS18-217ENST00000580958 PRPF40BQ6NWY9 871 aaKnown RBP12.64□□□□□ -0.39
SS18-217ENST00000580958 SLC51AQ86UW1 340 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 RASEFQ8IZ41 740 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 SPATA5Q8NB90 893 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 MAP4K1Q92918 833 aa12.64□□□□□ -0.39
SS18-217ENST00000580958 MAST3O60307 1309 aa12.63□□□□□ -0.39
SS18-217ENST00000580958 LTBP1Q14766 1721 aa12.63□□□□□ -0.39
SS18-217ENST00000580958 ZFYP08048 801 aaPredicted RBP12.63□□□□□ -0.39
SS18-217ENST00000580958 SPRYD3Q8NCJ5 442 aa12.63□□□□□ -0.39
SS18-217ENST00000580958 KCNB2Q92953 911 aa12.63□□□□□ -0.39
SS18-217ENST00000580958 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.63□□□□□ -0.39
SS18-217ENST00000580958 IQSEC3Q9UPP2 1182 aaPredicted RBP12.63□□□□□ -0.39
SS18-217ENST00000580958 MAST2Q6P0Q8 1798 aa12.63□□□□□ -0.39
SS18-217ENST00000580958 ZNF804BA4D1E1 1349 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 COL1A1P02452 1464 aaPredicted RBP12.62□□□□□ -0.39
SS18-217ENST00000580958 KLRG2A4D1S0 409 aaPredicted RBP12.62□□□□□ -0.39
SS18-217ENST00000580958 K7ELQ4 463 aaPredicted RBP12.62□□□□□ -0.39
SS18-217ENST00000580958 ST18O60284 1047 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 KLRK1P26718 216 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 HOXA10P31260 410 aaPredicted RBP12.62□□□□□ -0.39
SS18-217ENST00000580958 NECTIN1Q15223 517 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 WASHC4Q2M389 1173 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 CREB3L3Q68CJ9 461 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 ZSCAN25Q6NSZ9 544 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 OSBP2Q969R2 916 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 FAM84BQ96KN1 310 aaPredicted RBP12.62□□□□□ -0.39
SS18-217ENST00000580958 CRAMP1Q96RY5 1269 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 BRIP1Q9BX63 1249 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 GNL3LQ9NVN8 582 aaKnown RBP12.62□□□□□ -0.39
SS18-217ENST00000580958 WWC3Q9ULE0 1092 aa12.62□□□□□ -0.39
SS18-217ENST00000580958 SLC27A2O14975 620 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 IDH1O75874 414 aaKnown RBP12.61□□□□□ -0.39
SS18-217ENST00000580958 POTEIP0CG38 1075 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 PDE6AP16499 860 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 ADD2P35612 726 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 NEK4P51957 841 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 CAVIN4Q5BKX8 364 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 FBXO33Q7Z6M2 555 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 APPBP2Q92624 585 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 SLKQ9H2G2 1235 aaPredicted RBP12.61□□□□□ -0.39
SS18-217ENST00000580958 XDHP47989 1333 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 IRS2Q9Y4H2 1338 aa12.61□□□□□ -0.39
SS18-217ENST00000580958 KIAA1551Q9HCM1 1747 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 BBOX1O75936 387 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 GPSM2P81274 684 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 SLC9C2Q5TAH2 1124 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 VPS53Q5VIR6 699 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 VPS37DQ86XT2 251 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 UPF3BQ9BZI7 483 aaKnown RBP12.6□□□□□ -0.39
SS18-217ENST00000580958 ANKIB1Q9P2G1 1089 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 LEMD3Q9Y2U8 911 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 SLX4Q8IY92 1834 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 ZNF532Q9HCE3 1301 aa12.6□□□□□ -0.39
SS18-217ENST00000580958 DLEC1Q9Y238 1755 aa12.59□□□□□ -0.39
SS18-217ENST00000580958 NPR1P16066 1061 aa12.59□□□□□ -0.39
SS18-217ENST00000580958 HIBADHP31937 336 aaKnown RBP12.59□□□□□ -0.39
SS18-217ENST00000580958 PDE6BP35913 854 aa12.59□□□□□ -0.39
SS18-217ENST00000580958 MAP3K12Q12852 859 aa12.59□□□□□ -0.39
SS18-217ENST00000580958 UBE3CQ15386 1083 aa12.59□□□□□ -0.39
SS18-217ENST00000580958 RNF20Q5VTR2 975 aa12.59□□□□□ -0.39
SS18-217ENST00000580958 JAKMIP1Q96N16 626 aaKnown RBP12.59□□□□□ -0.39
SS18-217ENST00000580958 GPR101Q96P66 508 aaPredicted RBP12.59□□□□□ -0.39
SS18-217ENST00000580958 DSCC1Q9BVC3 393 aa12.59□□□□□ -0.39
SS18-217ENST00000580958 PUS7LQ9H0K6 701 aaKnown RBP12.59□□□□□ -0.39
SS18-217ENST00000580958 DENND2AQ9ULE3 1009 aa12.59□□□□□ -0.39
SS18-217ENST00000580958 TCRBV5S4A2TA0A5A2 114 aa12.58□□□□□ -0.4
SS18-217ENST00000580958 PPEF1O14829 653 aaPredicted RBP12.58□□□□□ -0.4
SS18-217ENST00000580958 GPAA1O43292 621 aa12.58□□□□□ -0.4
SS18-217ENST00000580958 SRGNP10124 158 aa12.58□□□□□ -0.4
SS18-217ENST00000580958 HSPD1P10809 573 aaKnown RBP12.58□□□□□ -0.4
SS18-217ENST00000580958 ZKSCAN1P17029 563 aaPredicted RBP12.58□□□□□ -0.4
SS18-217ENST00000580958 CASTP20810 708 aaKnown RBP12.58□□□□□ -0.4
SS18-217ENST00000580958 ADCK5Q3MIX3 580 aa12.58□□□□□ -0.4
SS18-217ENST00000580958 TXNRD3Q86VQ6 643 aa12.58□□□□□ -0.4
SS18-217ENST00000580958 MAGEB6Q8N7X4 407 aa12.58□□□□□ -0.4
SS18-217ENST00000580958 PHF12Q96QT6 1004 aa12.58□□□□□ -0.4
SS18-217ENST00000580958 MYH2Q9UKX2 1941 aa12.58□□□□□ -0.4
SS18-217ENST00000580958 RPAP1Q9BWH6 1393 aaPredicted RBP12.57□□□□□ -0.4
SS18-217ENST00000580958 BAZ2AQ9UIF9 1905 aaKnown RBP12.57□□□□□ -0.4
SS18-217ENST00000580958 SEMA3EO15041 775 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 FRAT2O75474 233 aaPredicted RBP12.57□□□□□ -0.4
SS18-217ENST00000580958 UFL1O94874 794 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 CPA1P15085 419 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 ATP2B4P23634 1241 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 NOL8Q76FK4 1167 aaKnown RBP12.57□□□□□ -0.4
SS18-217ENST00000580958 TMC4Q7Z404 712 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 C2CD5Q86YS7 1000 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 SP8Q8IXZ3 490 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 TM6SF1Q9BZW5 370 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 PDGFDQ9GZP0 370 aaPredicted RBP12.57□□□□□ -0.4
SS18-217ENST00000580958 LRP2BPQ9P2M1 347 aa12.57□□□□□ -0.4
SS18-217ENST00000580958 GGA1Q9UJY5 639 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms