RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.29□□□□□ -0.6
SS18-214ENST00000580003 SHISA2Q6UWI4 295 aa11.29□□□□□ -0.6
SS18-214ENST00000580003 PI16Q6UXB8 463 aa11.29□□□□□ -0.6
SS18-214ENST00000580003 DNAJC14Q6Y2X3 702 aaPredicted RBP11.29□□□□□ -0.6
SS18-214ENST00000580003 VN1R5Q7Z5H4 357 aa11.29□□□□□ -0.6
SS18-214ENST00000580003 SLC7A3Q8WY07 619 aa11.29□□□□□ -0.6
SS18-214ENST00000580003 LENG1Q96BZ8 264 aaPredicted RBP11.29□□□□□ -0.6
SS18-214ENST00000580003 CD68P34810 354 aaPredicted RBP11.28□□□□□ -0.6
SS18-214ENST00000580003 FGD1P98174 961 aa11.28□□□□□ -0.6
SS18-214ENST00000580003 GRM2Q14416 872 aa11.28□□□□□ -0.6
SS18-214ENST00000580003 EAPPQ56P03 285 aaPredicted RBP11.28□□□□□ -0.6
SS18-214ENST00000580003 GPAT2Q6NUI2 795 aa11.28□□□□□ -0.6
SS18-214ENST00000580003 PRPF40BQ6NWY9 871 aaKnown RBP11.28□□□□□ -0.6
SS18-214ENST00000580003 OSGEPQ9NPF4 335 aa11.28□□□□□ -0.6
SS18-214ENST00000580003 WWC3Q9ULE0 1092 aa11.28□□□□□ -0.6
SS18-214ENST00000580003 ERCC3P19447 782 aa11.27□□□□□ -0.61
SS18-214ENST00000580003 GALNT11Q8NCW6 608 aa11.27□□□□□ -0.61
SS18-214ENST00000580003 BCO2Q9BYV7 579 aa11.27□□□□□ -0.61
SS18-214ENST00000580003 CLEC4MQ9H2X3 399 aaPredicted RBP11.27□□□□□ -0.61
SS18-214ENST00000580003 TMEM238LA0A1B0GVL6 79 aa11.26□□□□□ -0.61
SS18-214ENST00000580003 C19orf57Q0VDD7 668 aa11.26□□□□□ -0.61
SS18-214ENST00000580003 SETDB2Q96T68 719 aa11.26□□□□□ -0.61
SS18-214ENST00000580003 MRPL18Q9H0U6 180 aaKnown RBP11.26□□□□□ -0.61
SS18-214ENST00000580003 IGHA1P01876 353 aa11.25□□□□□ -0.61
SS18-214ENST00000580003 PCDH1Q08174 1060 aa11.25□□□□□ -0.61
SS18-214ENST00000580003 SUZ12Q15022 739 aaKnown RBP11.25□□□□□ -0.61
SS18-214ENST00000580003 KLHDC7BQ96G42 594 aa11.25□□□□□ -0.61
SS18-214ENST00000580003 ABCB6Q9NP58 842 aa11.25□□□□□ -0.61
SS18-214ENST00000580003 SPG7Q9UQ90 795 aa11.25□□□□□ -0.61
SS18-214ENST00000580003 SOX1O00570 391 aaPredicted RBP11.24□□□□□ -0.61
SS18-214ENST00000580003 MSTNO14793 375 aa11.24□□□□□ -0.61
SS18-214ENST00000580003 ITGB2P05107 769 aa11.24□□□□□ -0.61
SS18-214ENST00000580003 ESRRAP11474 423 aaPredicted RBP11.24□□□□□ -0.61
SS18-214ENST00000580003 ITPKAP23677 461 aa11.24□□□□□ -0.61
SS18-214ENST00000580003 PTPN12Q05209 780 aaKnown RBP11.24□□□□□ -0.61
SS18-214ENST00000580003 NPAS4Q8IUM7 802 aa11.24□□□□□ -0.61
SS18-214ENST00000580003 EIF4EBP3O60516 100 aaPredicted RBP11.23□□□□□ -0.61
SS18-214ENST00000580003 PRPF40AO75400 957 aaKnown RBP11.23□□□□□ -0.61
SS18-214ENST00000580003 GATA4P43694 442 aa11.23□□□□□ -0.61
SS18-214ENST00000580003 FCGRTP55899 365 aa11.23□□□□□ -0.61
SS18-214ENST00000580003 ADGRE1Q14246 886 aa11.23□□□□□ -0.61
SS18-214ENST00000580003 FOXD4L6Q3SYB3 417 aaPredicted RBP11.23□□□□□ -0.61
SS18-214ENST00000580003 NXPE4Q6UWF7 544 aa11.23□□□□□ -0.61
SS18-214ENST00000580003 FOXD4L3Q6VB84 417 aaPredicted RBP11.23□□□□□ -0.61
SS18-214ENST00000580003 DTHD1Q6ZMT9 781 aa11.23□□□□□ -0.61
SS18-214ENST00000580003 GLIS3Q8NEA6 775 aa11.23□□□□□ -0.61
SS18-214ENST00000580003 ZNF576Q9H609 170 aa11.23□□□□□ -0.61
SS18-214ENST00000580003 ZFYVE1Q9HBF4 777 aa11.23□□□□□ -0.61
SS18-214ENST00000580003 GIPC1O14908 333 aa11.22□□□□□ -0.61
SS18-214ENST00000580003 TRIM26Q12899 539 aaPredicted RBP11.22□□□□□ -0.61
SS18-214ENST00000580003 MBTPS1Q14703 1052 aa11.22□□□□□ -0.61
SS18-214ENST00000580003 SOX17Q9H6I2 414 aaPredicted RBP11.22□□□□□ -0.61
SS18-214ENST00000580003 XRCC5P13010 732 aaKnown RBP11.21□□□□□ -0.61
SS18-214ENST00000580003 DUOXA2Q1HG44 320 aa11.21□□□□□ -0.61
SS18-214ENST00000580003 TXNRD3Q86VQ6 643 aa11.21□□□□□ -0.61
SS18-214ENST00000580003 DDX54Q8TDD1 881 aaKnown RBP11.21□□□□□ -0.61
SS18-214ENST00000580003 FRMD6Q96NE9 622 aa11.21□□□□□ -0.61
SS18-214ENST00000580003 SPOCK3Q9BQ16 436 aa11.21□□□□□ -0.61
SS18-214ENST00000580003 SRCIN1Q9C0H9 1055 aa11.21□□□□□ -0.61
SS18-214ENST00000580003 KCNK4Q9NYG8 393 aa11.21□□□□□ -0.61
SS18-214ENST00000580003 DDX3YO15523 660 aaKnown RBP11.2□□□□□ -0.62
SS18-214ENST00000580003 NLRP12P59046 1061 aa11.2□□□□□ -0.62
SS18-214ENST00000580003 GSTM4Q03013 218 aa11.2□□□□□ -0.62
SS18-214ENST00000580003 RPS26P11Q5JNZ5 115 aaPredicted RBP11.2□□□□□ -0.62
SS18-214ENST00000580003 HGSNATQ68CP4 663 aa11.2□□□□□ -0.62
SS18-214ENST00000580003 TM4SF5O14894 197 aa11.19□□□□□ -0.62
SS18-214ENST00000580003 ZNF423Q2M1K9 1284 aa11.19□□□□□ -0.62
SS18-214ENST00000580003 ACAD11Q709F0 780 aa11.19□□□□□ -0.62
SS18-214ENST00000580003 TMEM130Q8N3G9 435 aa11.19□□□□□ -0.62
SS18-214ENST00000580003 WFDC12Q8WWY7 111 aa11.19□□□□□ -0.62
SS18-214ENST00000580003 AKTIPQ9H8T0 292 aa11.19□□□□□ -0.62
SS18-214ENST00000580003 FOXD4L4Q8WXT5 416 aaPredicted RBP11.18□□□□□ -0.62
SS18-214ENST00000580003 DUSP9Q99956 384 aaKnown RBP11.18□□□□□ -0.62
SS18-214ENST00000580003 AKAP2Q9Y2D5 859 aa11.18□□□□□ -0.62
SS18-214ENST00000580003 F8W735 103 aaPredicted RBP11.17□□□□□ -0.62
SS18-214ENST00000580003 ADAM11O75078 769 aa11.17□□□□□ -0.62
SS18-214ENST00000580003 B3GALT4O96024 378 aa11.17□□□□□ -0.62
SS18-214ENST00000580003 PROCP04070 461 aa11.17□□□□□ -0.62
SS18-214ENST00000580003 GNA15P30679 374 aa11.17□□□□□ -0.62
SS18-214ENST00000580003 GSTT1P30711 240 aa11.17□□□□□ -0.62
SS18-214ENST00000580003 IREB2P48200 963 aaKnown RBP11.17□□□□□ -0.62
SS18-214ENST00000580003 UBASH3BQ8TF42 649 aa11.17□□□□□ -0.62
SS18-214ENST00000580003 USP26Q9BXU7 913 aa11.17□□□□□ -0.62
SS18-214ENST00000580003 OSBPL7Q9BZF2 842 aa11.17□□□□□ -0.62
SS18-214ENST00000580003 WISP1O95388 367 aa11.16□□□□□ -0.62
SS18-214ENST00000580003 NOS3P29474 1203 aa11.16□□□□□ -0.62
SS18-214ENST00000580003 MFAP1P55081 439 aaKnown RBP11.16□□□□□ -0.62
SS18-214ENST00000580003 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.16□□□□□ -0.62
SS18-214ENST00000580003 C12orf49Q9H741 205 aa11.16□□□□□ -0.62
SS18-214ENST00000580003 ALX3O95076 343 aa11.15□□□□□ -0.62
SS18-214ENST00000580003 FBXO33Q7Z6M2 555 aa11.15□□□□□ -0.62
SS18-214ENST00000580003 FAM8A1Q9UBU6 413 aa11.15□□□□□ -0.62
SS18-214ENST00000580003 GPN3Q9UHW5 284 aaPredicted RBP11.15□□□□□ -0.62
SS18-214ENST00000580003 CYP11A1P05108 521 aa11.14□□□□□ -0.63
SS18-214ENST00000580003 EIF4BP23588 611 aaKnown RBP11.14□□□□□ -0.63
SS18-214ENST00000580003 XPCQ01831 940 aaPredicted RBP11.14□□□□□ -0.63
SS18-214ENST00000580003 AGGF1Q8N302 714 aaeCLIP11.14□□□□□ -0.63
SS18-214ENST00000580003 ZNF157P51786 506 aaPredicted RBP11.13□□□□□ -0.63
SS18-214ENST00000580003 PPP2R3AQ06190 1150 aa11.13□□□□□ -0.63
SS18-214ENST00000580003 KIAA1211Q6ZU35 1233 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms