RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 ALX1Q15699 326 aa13.17□□□□□ -0.3
SKA2-204ENST00000578519 MCTP1Q6DN14 999 aa13.17□□□□□ -0.3
SKA2-204ENST00000578519 CCDC83Q8IWF9 413 aa13.17□□□□□ -0.3
SKA2-204ENST00000578519 NCOA7Q8NI08 942 aa13.17□□□□□ -0.3
SKA2-204ENST00000578519 LLPHQ9BRT6 129 aaKnown RBP13.17□□□□□ -0.3
SKA2-204ENST00000578519 LRP2BPQ9P2M1 347 aa13.17□□□□□ -0.3
SKA2-204ENST00000578519 SRP68Q9UHB9 627 aaKnown RBP13.17□□□□□ -0.3
SKA2-204ENST00000578519 MINPP1Q9UNW1 487 aa13.17□□□□□ -0.3
SKA2-204ENST00000578519 MYH14Q7Z406 1995 aaKnown RBP13.17□□□□□ -0.3
SKA2-204ENST00000578519 LAMB2P55268 1798 aa13.17□□□□□ -0.3
SKA2-204ENST00000578519 WDR19Q8NEZ3 1342 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 E7EWF7 191 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 STX6O43752 255 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 DHX16O60231 1041 aaKnown RBP13.16□□□□□ -0.3
SKA2-204ENST00000578519 MBD3O95983 291 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 APPP05067 770 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 KCNQ4P56696 695 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 SCARF1Q14162 830 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 FAM182BQ5T319 152 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 Q6ZUG5 572 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 FBXL16Q8N461 479 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 CNBD1Q8NA66 436 aa13.16□□□□□ -0.3
SKA2-204ENST00000578519 DDX49Q9Y6V7 483 aaKnown RBP13.16□□□□□ -0.3
SKA2-204ENST00000578519 ZMYM6O95789 1325 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 PDS5AQ29RF7 1337 aaKnown RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 ZNF532Q9HCE3 1301 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 SCN7AQ01118 1682 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 PATL2C9JE40 543 aaKnown RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 PHF14O94880 888 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 ZSCAN22P10073 491 aaPredicted RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 GJB2P29033 226 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 MCM5P33992 734 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 HMGN5P82970 282 aaKnown RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 KLHL40Q2TBA0 621 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 SPTY2D1Q68D10 685 aaPredicted RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 PTF1AQ7RTS3 328 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 TMC4Q7Z404 712 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 SYAP1Q96A49 352 aaPredicted RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 ZNF274Q96GC6 653 aaPredicted RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 RBM17Q96I25 401 aaKnown RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 PIH1D3Q9NQM4 214 aaKnown RBP13.15□□□□□ -0.3
SKA2-204ENST00000578519 LEMD3Q9Y2U8 911 aa13.15□□□□□ -0.3
SKA2-204ENST00000578519 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.14□□□□□ -0.31
SKA2-204ENST00000578519 PLSCR1O15162 318 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 FGAP02671 866 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 CPA1P15085 419 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 BCAMP50895 628 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 EVX2Q03828 476 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 GRAPQ13588 217 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 RASGRF1Q13972 1273 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 ME3Q16798 604 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 LARP1BQ659C4 914 aaKnown RBP13.14□□□□□ -0.31
SKA2-204ENST00000578519 FAM184AQ8NB25 1140 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 GRAPLQ8TC17 118 aaPredicted RBP13.14□□□□□ -0.31
SKA2-204ENST00000578519 RPGRQ92834 1020 aaKnown RBP13.14□□□□□ -0.31
SKA2-204ENST00000578519 AKT1S1Q96B36 256 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 PUS7LQ9H0K6 701 aaKnown RBP13.14□□□□□ -0.31
SKA2-204ENST00000578519 CNNM2Q9H8M5 875 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 TPCN1Q9ULQ1 816 aa13.14□□□□□ -0.31
SKA2-204ENST00000578519 LY75O60449 1722 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 GOLGA6L3A6NEY3 463 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 TRIM37O94972 964 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 HIBADHP31937 336 aaKnown RBP13.13□□□□□ -0.31
SKA2-204ENST00000578519 EXOSC10Q01780 885 aaKnown RBP13.13□□□□□ -0.31
SKA2-204ENST00000578519 TOB2Q14106 344 aaPredicted RBP13.13□□□□□ -0.31
SKA2-204ENST00000578519 NFIXQ14938 502 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 MAGEB6Q8N7X4 407 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 NAPBQ9H115 298 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 RNF41Q9H4P4 317 aaPredicted RBP13.13□□□□□ -0.31
SKA2-204ENST00000578519 C4BP0C0L5 1744 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 DDX60Q8IY21 1712 aaKnown RBP13.13□□□□□ -0.31
SKA2-204ENST00000578519 ZNF804BA4D1E1 1349 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 PNPLA7Q6ZV29 1317 aa13.13□□□□□ -0.31
SKA2-204ENST00000578519 PFKFB2O60825 505 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 BBOX1O75936 387 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 SYT1P21579 422 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 CPLX2Q6PUV4 134 aaKnown RBP13.12□□□□□ -0.31
SKA2-204ENST00000578519 FBXO33Q7Z6M2 555 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 KLHL34Q8N239 644 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 NLGN1Q8N2Q7 840 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 CELF1Q92879 486 aaKnown RBP13.12□□□□□ -0.31
SKA2-204ENST00000578519 BRF1Q92994 677 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 GTF3C6Q969F1 213 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 STRBPQ96SI9 672 aaKnown RBP13.12□□□□□ -0.31
SKA2-204ENST00000578519 MTA3Q9BTC8 594 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 AGXT2Q9BYV1 514 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 KRT23Q9C075 422 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 RAI14Q9P0K7 980 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 ZDHHC9Q9Y397 364 aa13.12□□□□□ -0.31
SKA2-204ENST00000578519 TCRBV5S4A2TA0A5A2 114 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 PRPF40AO75400 957 aaKnown RBP13.11□□□□□ -0.31
SKA2-204ENST00000578519 F13A1P00488 732 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 SERPINB2P05120 415 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 CYP7A1P22680 504 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 ATP2B4P23634 1241 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 RXRBP28702 533 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 NT5C2P49902 561 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 TXNRD1Q16881 649 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 PI16Q6UXB8 463 aa13.11□□□□□ -0.31
SKA2-204ENST00000578519 CERS3Q8IU89 383 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms