RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 AFMP43652 599 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 CCDC178Q5BJE1 867 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 RILPL1Q5EBL4 403 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 LZTFL1Q9NQ48 299 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 TRMT112Q9UI30 125 aaKnown RBP11.8□□□□□ -0.52
PTPRM-205ENST00000577827 TRPM1Q7Z4N2 1603 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 AATKQ6ZMQ8 1374 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 CHMP4BP1P59074 171 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 MAP2K1Q02750 393 aaPredicted RBP11.8□□□□□ -0.52
PTPRM-205ENST00000577827 ANKRD18AQ8IVF6 992 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 ARFGAP2Q8N6H7 521 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 TMEM87AQ8NBN3 555 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 DYDC1Q8WWB3 177 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 HSP90AA4PQ58FG1 418 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 SPECC1Q5M775 1068 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 GPR161Q8N6U8 529 aaKnown RBP11.8□□□□□ -0.52
PTPRM-205ENST00000577827 FAM227BQ96M60 508 aa11.8□□□□□ -0.52
PTPRM-205ENST00000577827 A0A1B0GUL7 405 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 CUTAO60888 179 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 NEFHP12036 1026 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 TFCP2Q12800 502 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 ADALQ6DHV7 355 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 KRBA2Q6ZNG9 492 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 LRRC8AQ8IWT6 810 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 MKNK2Q9HBH9 465 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 PLA2R1Q13018 1463 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 PSDA5PKW4 1024 aaPredicted RBP11.79□□□□□ -0.52
PTPRM-205ENST00000577827 ZNF202O95125 648 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 SMC1AQ14683 1233 aaKnown RBP11.79□□□□□ -0.52
PTPRM-205ENST00000577827 MAATS1Q7Z4T9 603 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 TTC6Q86TZ1 520 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 TSC1Q92574 1164 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 TAOK3Q9H2K8 898 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 PUF60Q9UHX1 559 aaKnown RBP11.79□□□□□ -0.52
PTPRM-205ENST00000577827 ERBB4Q15303 1308 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 ZNF853P0CG23 659 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 USP44Q9H0E7 712 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 ZNF215Q9UL58 517 aaPredicted RBP11.79□□□□□ -0.52
PTPRM-205ENST00000577827 GNAT2P19087 354 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 CCDC96Q2M329 555 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 SPECC1LQ69YQ0 1117 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 NAPGQ99747 312 aaPredicted RBP11.79□□□□□ -0.52
PTPRM-205ENST00000577827 EXOC1Q9NV70 894 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 ZNF652Q9Y2D9 606 aa11.79□□□□□ -0.52
PTPRM-205ENST00000577827 LUC7L2Q9Y383 392 aaKnown RBP11.79□□□□□ -0.52
PTPRM-205ENST00000577827 CALM1P0DP23 149 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 CALM2P0DP24 149 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 CALM3P0DP25 149 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 HOXC9P31274 260 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 STAT6P42226 847 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 ETF1P62495 437 aaKnown RBP11.78□□□□□ -0.52
PTPRM-205ENST00000577827 TNNI3KQ59H18 835 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 GIGYF2Q6Y7W6 1299 aaKnown RBP11.78□□□□□ -0.52
PTPRM-205ENST00000577827 C10orf67Q8IYJ2 551 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 KBTBD3Q8NAB2 608 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 DHX58Q96C10 678 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 FPGT-TNNI3KV9GXZ4 949 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 TARBP1Q13395 1621 aaKnown RBP11.78□□□□□ -0.52
PTPRM-205ENST00000577827 ABCA8O94911 1581 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 ATP8B1O43520 1251 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 BRD3Q15059 726 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 SLC9C2Q5TAH2 1124 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 IQUBQ8NA54 791 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 FAM76AQ8TAV0 307 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 TMEM87BQ96K49 555 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 SEPT11Q9NVA2 429 aaKnown RBP11.78□□□□□ -0.52
PTPRM-205ENST00000577827 KIAA1468Q9P260 1216 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 KCNH3Q9ULD8 1083 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 PYCARDQ9ULZ3 195 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 PDE4BQ07343 736 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 CCDC40Q4G0X9 1142 aa11.78□□□□□ -0.52
PTPRM-205ENST00000577827 SAMD9LQ8IVG5 1584 aa11.77□□□□□ -0.52
PTPRM-205ENST00000577827 RTL9Q8NET4 1388 aa11.77□□□□□ -0.52
PTPRM-205ENST00000577827 CETN2P41208 172 aa11.77□□□□□ -0.52
PTPRM-205ENST00000577827 RNF216Q9NWF9 866 aaPredicted RBP11.77□□□□□ -0.52
PTPRM-205ENST00000577827 MKRN1Q9UHC7 482 aaKnown RBP11.77□□□□□ -0.52
PTPRM-205ENST00000577827 BICDL2A1A5D9 508 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 EFCAB8A8MWE9 144 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 WDHD1O75717 1129 aaPredicted RBP11.77□□□□□ -0.53
PTPRM-205ENST00000577827 RHOXF2BP0C7M4 288 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 CALML3P27482 149 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 PPP1R2P41236 205 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 GNAQP50148 359 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 VAV2P52735 878 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 LRMPQ12912 555 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 MICALL1Q8N3F8 863 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC42Q96M95 316 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 RHOXF2Q9BQY4 288 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 USP5P45974 858 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 SIRT2Q8IXJ6 389 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 ZNF444Q8N0Y2 327 aaPredicted RBP11.77□□□□□ -0.53
PTPRM-205ENST00000577827 IGSF22Q8N9C0 903 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 XPO4Q9C0E2 1151 aaKnown RBP11.77□□□□□ -0.53
PTPRM-205ENST00000577827 LSG1Q9H089 658 aaKnown RBP11.77□□□□□ -0.53
PTPRM-205ENST00000577827 NR1I2O75469 434 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 MATR3P43243 847 aaKnown RBP eCLIP11.77□□□□□ -0.536e-7■■■■■ 27.6
PTPRM-205ENST00000577827 TMTC1Q8IUR5 882 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 SIRT1Q96EB6 747 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.77□□□□□ -0.53
PTPRM-205ENST00000577827 DSCC1Q9BVC3 393 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms