RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 RBCK1Q9BYM8 510 aa5.93□□□□□ -1.46
NUP88-209ENST00000574855 CEP41Q9BYV8 373 aa5.93□□□□□ -1.46
NUP88-209ENST00000574855 NIF3L1Q9GZT8 377 aa5.93□□□□□ -1.46
NUP88-209ENST00000574855 KCNK4Q9NYG8 393 aa5.93□□□□□ -1.46
NUP88-209ENST00000574855 A0A1W2PP55 124 aa5.92□□□□□ -1.46
NUP88-209ENST00000574855 SOX1O00570 391 aaPredicted RBP5.92□□□□□ -1.46
NUP88-209ENST00000574855 DDX3YO15523 660 aaKnown RBP5.92□□□□□ -1.46
NUP88-209ENST00000574855 EIF4EBP3O60516 100 aaPredicted RBP5.92□□□□□ -1.46
NUP88-209ENST00000574855 WISP1O95388 367 aa5.92□□□□□ -1.46
NUP88-209ENST00000574855 C19orf57Q0VDD7 668 aa5.92□□□□□ -1.46
NUP88-209ENST00000574855 ORC1Q13415 861 aa5.92□□□□□ -1.46
NUP88-209ENST00000574855 LCE3BQ5TA77 95 aa5.92□□□□□ -1.46
NUP88-209ENST00000574855 Q6ZS46 218 aa5.92□□□□□ -1.46
NUP88-209ENST00000574855 VN1R5Q7Z5H4 357 aa5.92□□□□□ -1.46
NUP88-209ENST00000574855 DNAJC25Q9H1X3 360 aa5.92□□□□□ -1.46
NUP88-209ENST00000574855 ITGB7P26010 798 aa5.91□□□□□ -1.46
NUP88-209ENST00000574855 KCNA1Q09470 495 aa5.91□□□□□ -1.46
NUP88-209ENST00000574855 PRSS36Q5K4E3 855 aa5.91□□□□□ -1.46
NUP88-209ENST00000574855 USPL1Q5W0Q7 1092 aa5.91□□□□□ -1.46
NUP88-209ENST00000574855 KIAA1211Q6ZU35 1233 aa5.91□□□□□ -1.46
NUP88-209ENST00000574855 CCNJLQ8IV13 435 aa5.91□□□□□ -1.46
NUP88-209ENST00000574855 FOXD4L4Q8WXT5 416 aaPredicted RBP5.91□□□□□ -1.46
NUP88-209ENST00000574855 LIN7BQ9HAP6 207 aa5.91□□□□□ -1.46
NUP88-209ENST00000574855 DCTN4Q9UJW0 460 aa5.91□□□□□ -1.46
NUP88-209ENST00000574855 A0A096LPE4 126 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 A0A1W2PPZ6 126 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 EIF1AYO14602 144 aaKnown RBP5.9□□□□□ -1.46
NUP88-209ENST00000574855 GPR182O15218 404 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 ADAM11O75078 769 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 NLRP12P59046 1061 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 KIAA0319Q5VV43 1072 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 PRR23CQ6ZRP0 262 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 CCDC74AQ96AQ1 378 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 ALKBH8Q96BT7 664 aaKnown RBP5.9□□□□□ -1.46
NUP88-209ENST00000574855 UBL7Q96S82 380 aaPredicted RBP5.9□□□□□ -1.46
NUP88-209ENST00000574855 EHD4Q9H223 541 aa5.9□□□□□ -1.46
NUP88-209ENST00000574855 SOX17Q9H6I2 414 aaPredicted RBP5.9□□□□□ -1.46
NUP88-209ENST00000574855 METTL12A8MUP2 240 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 IGHA2P01877 340 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 ESRRAP11474 423 aaPredicted RBP5.89□□□□□ -1.47
NUP88-209ENST00000574855 RANGAP1P46060 587 aaPredicted RBP5.89□□□□□ -1.47
NUP88-209ENST00000574855 GRIA4P48058 902 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 ZMYM1Q5SVZ6 1142 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 HGSNATQ68CP4 663 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 SLC51AQ86UW1 340 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 UBASH3BQ8TF42 649 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 CSRNP1Q96S65 589 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 TCF12Q99081 682 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 TRAIPQ9BWF2 469 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 RNF208Q9H0X6 261 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 CLEC4MQ9H2X3 399 aaPredicted RBP5.89□□□□□ -1.47
NUP88-209ENST00000574855 NPHS2Q9NP85 383 aa5.89□□□□□ -1.47
NUP88-209ENST00000574855 PATL2C9JE40 543 aaKnown RBP5.88□□□□□ -1.47
NUP88-209ENST00000574855 DHX15O43143 795 aaKnown RBP5.88□□□□□ -1.47
NUP88-209ENST00000574855 SART1O43290 800 aaKnown RBP5.88□□□□□ -1.47
NUP88-209ENST00000574855 GADD45BO75293 160 aaPredicted RBP5.88□□□□□ -1.47
NUP88-209ENST00000574855 MAPK1P28482 360 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 PLCB3Q01970 1234 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 GSTM4Q03013 218 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 PCDH1Q08174 1060 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 SPRED3Q2MJR0 410 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 UVSSAQ2YD98 709 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 ANKRD34AQ69YU3 496 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 TMC7Q7Z402 723 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 DDX54Q8TDD1 881 aaKnown RBP5.88□□□□□ -1.47
NUP88-209ENST00000574855 RUSC1Q9BVN2 902 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 IVNS1ABPQ9Y6Y0 642 aa5.88□□□□□ -1.47
NUP88-209ENST00000574855 MEGF11A6BM72 1044 aa5.87□□□□□ -1.47
NUP88-209ENST00000574855 NUTM2GQ5VZR2 741 aa5.87□□□□□ -1.47
NUP88-209ENST00000574855 FDX2Q6P4F2 183 aa5.87□□□□□ -1.47
NUP88-209ENST00000574855 USP26Q9BXU7 913 aa5.87□□□□□ -1.47
NUP88-209ENST00000574855 NLRP2Q9NX02 1062 aa5.87□□□□□ -1.47
NUP88-209ENST00000574855 PPP4R2Q9NY27 417 aa5.87□□□□□ -1.47
NUP88-209ENST00000574855 RAXQ9Y2V3 346 aa5.87□□□□□ -1.47
NUP88-209ENST00000574855 CYP11A1P05108 521 aa5.86□□□□□ -1.47
NUP88-209ENST00000574855 ZNF423Q2M1K9 1284 aa5.86□□□□□ -1.47
NUP88-209ENST00000574855 ZSCAN29Q8IWY8 852 aaPredicted RBP5.86□□□□□ -1.47
NUP88-209ENST00000574855 UTP4Q969X6 686 aaKnown RBP5.86□□□□□ -1.47
NUP88-209ENST00000574855 FAM46AQ96IP4 442 aaKnown RBP5.86□□□□□ -1.47
NUP88-209ENST00000574855 KRTAP9-9Q9BYP9 154 aa5.86□□□□□ -1.47
NUP88-209ENST00000574855 KRTAP9-4Q9BYQ2 154 aa5.86□□□□□ -1.47
NUP88-209ENST00000574855 ZFYVE1Q9HBF4 777 aa5.86□□□□□ -1.47
NUP88-209ENST00000574855 CYP4F12Q9HCS2 524 aa5.86□□□□□ -1.47
NUP88-209ENST00000574855 STOML1Q9UBI4 398 aa5.86□□□□□ -1.47
NUP88-209ENST00000574855 TRAK1Q9UPV9 953 aa5.86□□□□□ -1.47
NUP88-209ENST00000574855 ITPKAP23677 461 aa5.85□□□□□ -1.47
NUP88-209ENST00000574855 PTPN12Q05209 780 aaKnown RBP5.85□□□□□ -1.47
NUP88-209ENST00000574855 EXOSC6Q5RKV6 272 aaKnown RBP5.85□□□□□ -1.47
NUP88-209ENST00000574855 ARMC10Q8N2F6 343 aa5.85□□□□□ -1.47
NUP88-209ENST00000574855 C12orf50Q8NA57 414 aaPredicted RBP5.85□□□□□ -1.47
NUP88-209ENST00000574855 EPS8L3Q8TE67 593 aaKnown RBP5.85□□□□□ -1.47
NUP88-209ENST00000574855 MYRFLQ96LU7 910 aa5.85□□□□□ -1.47
NUP88-209ENST00000574855 LOC100289279A0A1B0GTE1 492 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 TMEM238LA0A1B0GVL6 79 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 GSC2O15499 205 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 TREHO43280 583 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 FSTP19883 344 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 GRM2Q14416 872 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 DSC3Q14574 896 aa5.84□□□□□ -1.47
NUP88-209ENST00000574855 PRPF40BQ6NWY9 871 aaKnown RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms