RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 RASGRF1Q13972 1273 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 PUM3Q15397 648 aaKnown RBP11.72□□□□□ -0.53
VPS53-206ENST00000570359 TTC6Q86TZ1 520 aa11.72□□□□□ -0.53
VPS53-206ENST00000570359 MYH14Q7Z406 1995 aaKnown RBP11.71□□□□□ -0.53
VPS53-206ENST00000570359 JCADQ9P266 1359 aa11.71□□□□□ -0.53
VPS53-206ENST00000570359 ERVV-1B6SEH8 477 aa11.71□□□□□ -0.53
VPS53-206ENST00000570359 ZNF213O14771 459 aa11.71□□□□□ -0.53
VPS53-206ENST00000570359 PRC1O43663 620 aa11.71□□□□□ -0.53
VPS53-206ENST00000570359 SLC51AQ86UW1 340 aa11.71□□□□□ -0.53
VPS53-206ENST00000570359 AIDAQ96BJ3 306 aa11.71□□□□□ -0.53
VPS53-206ENST00000570359 ARMT1Q9H993 441 aa11.71□□□□□ -0.53
VPS53-206ENST00000570359 KLF18A0A0U1RQI7 1052 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 GOLGA8BA8MQT2 603 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 SLC5A1P13866 664 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 GYG1P46976 350 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 UBE2HP62256 183 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 KRT85P78386 507 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 SLC4A8Q2Y0W8 1093 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 VGLL2Q8N8G2 317 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 SPATA32Q96LK8 384 aa11.71□□□□□ -0.54
VPS53-206ENST00000570359 GNPATO15228 680 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 PRKAB2O43741 272 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 PDE6AP16499 860 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 PDCP20941 246 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 CTDSPL2Q05D32 466 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 CCDC152Q4G0S7 254 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 MEX3CQ5U5Q3 659 aaKnown RBP11.7□□□□□ -0.54
VPS53-206ENST00000570359 CKAP2LQ8IYA6 745 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 BICD2Q8TD16 824 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 FBXW7Q969H0 707 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 MYL10Q9BUA6 226 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 CDCA7Q9BWT1 371 aaPredicted RBP11.7□□□□□ -0.54
VPS53-206ENST00000570359 TAF1P21675 1872 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 MBD4O95243 580 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 LIG1P18858 919 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 LRRFIP1Q32MZ4 808 aaKnown RBP11.7□□□□□ -0.54
VPS53-206ENST00000570359 TSGA10IPQ3SY00 556 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 SPATA5Q8NB90 893 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 ISY1Q9ULR0 285 aaKnown RBP11.7□□□□□ -0.54
VPS53-206ENST00000570359 SPEF2Q9C093 1822 aa11.7□□□□□ -0.54
VPS53-206ENST00000570359 AHDC1Q5TGY3 1603 aaPredicted RBP11.69□□□□□ -0.54
VPS53-206ENST00000570359 LAMA4Q16363 1823 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 B4E1Z4 1266 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 CTDNEP1O95476 244 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 ADD2P35612 726 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 CHRNDQ07001 517 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 TBC1D10CQ8IV04 446 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 LPIN2Q92539 896 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 CHMP4CQ96CF2 233 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 ZKSCAN3Q9BRR0 538 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 LRP2BPQ9P2M1 347 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 MYH3P11055 1940 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 RFX7Q2KHR2 1363 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 NTSR2O95665 410 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 CCDC183Q5T5S1 534 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 TBC1D9BQ66K14 1250 aa11.69□□□□□ -0.54
VPS53-206ENST00000570359 NSUN7Q8NE18 718 aaKnown RBP11.69□□□□□ -0.54
VPS53-206ENST00000570359 THRAP3Q9Y2W1 955 aaKnown RBP11.69□□□□□ -0.54
VPS53-206ENST00000570359 PTMAP06454 111 aaKnown RBP11.68□□□□□ -0.54
VPS53-206ENST00000570359 ZFYP08048 801 aaPredicted RBP11.68□□□□□ -0.54
VPS53-206ENST00000570359 PDIA3P30101 505 aaKnown RBP11.68□□□□□ -0.54
VPS53-206ENST00000570359 CCDC173Q0VFZ6 552 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 VPS37DQ86XT2 251 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 CCDC82Q8N4S0 544 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 SENP2Q9HC62 589 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 CTNNA3Q9UI47 895 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 USP21Q9UK80 565 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 ESPNB1AK53 854 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 CPLX1O14810 134 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 HMGB1P09429 215 aaKnown RBP11.68□□□□□ -0.54
VPS53-206ENST00000570359 TRDNQ13061 729 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 NFXL1Q6ZNB6 911 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 AMIGO3Q86WK7 504 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 MICU3Q86XE3 530 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 USP25Q9UHP3 1055 aa11.68□□□□□ -0.54
VPS53-206ENST00000570359 POLR3DP05423 398 aaPredicted RBP11.67□□□□□ -0.54
VPS53-206ENST00000570359 EXOSC10Q01780 885 aaKnown RBP11.67□□□□□ -0.54
VPS53-206ENST00000570359 RAI14Q9P0K7 980 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 ZNF652Q9Y2D9 606 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 MROH5Q6ZUA9 1318 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 SMIM22K7EJ46 135 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 PFKFB2O60825 505 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 TDO2P48775 406 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 NCOA7Q8NI08 942 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 AIFM3Q96NN9 605 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 DACT1Q9NYF0 836 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 TFCP2L1Q9NZI6 479 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 FBXO3Q9UK99 471 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 COL4A1P02462 1669 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 ANKRD36CQ5JPF3 1778 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 LTBP4Q8N2S1 1624 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 A0A087WWV3 80 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 KLRK1P26718 216 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 MCM5P33992 734 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 ANTXR2P58335 489 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 CHAF1AQ13111 956 aaPredicted RBP11.67□□□□□ -0.54
VPS53-206ENST00000570359 CYB5R4Q7L1T6 521 aa11.67□□□□□ -0.54
VPS53-206ENST00000570359 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS53-206ENST00000570359 CELF1Q92879 486 aaKnown RBP11.67□□□□□ -0.54
VPS53-206ENST00000570359 NAPBQ9H115 298 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms