RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 HHIPQ96QV1 700 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 NIF3L1Q9GZT8 377 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 LATS2Q9NRM7 1088 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 SOX13Q9UN79 622 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 A0A1W2PP55 124 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 EIF1AYO14602 144 aaKnown RBP5.6□□□□□ -1.51
VPS39-212ENST00000570023 TREHO43280 583 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 POLR3DP05423 398 aaPredicted RBP5.6□□□□□ -1.51
VPS39-212ENST00000570023 EPHA1P21709 976 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 MAPK1P28482 360 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 MBTPS1Q14703 1052 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 KIAA0319Q5VV43 1072 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 SHISA2Q6UWI4 295 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 WNT8BQ93098 351 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 CSRNP1Q96S65 589 aa5.6□□□□□ -1.51
VPS39-212ENST00000570023 SH2B1Q9NRF2 756 aaPredicted RBP5.6□□□□□ -1.51
VPS39-212ENST00000570023 LINC01387J3KSC0 135 aa5.59□□□□□ -1.51
VPS39-212ENST00000570023 HSP90AA1P07900 732 aaKnown RBP5.59□□□□□ -1.51
VPS39-212ENST00000570023 CCNJLQ8IV13 435 aa5.59□□□□□ -1.51
VPS39-212ENST00000570023 TMEM130Q8N3G9 435 aa5.59□□□□□ -1.51
VPS39-212ENST00000570023 GALNT11Q8NCW6 608 aa5.59□□□□□ -1.51
VPS39-212ENST00000570023 BSNDQ8WZ55 320 aa5.59□□□□□ -1.51
VPS39-212ENST00000570023 CCDC74AQ96AQ1 378 aa5.59□□□□□ -1.51
VPS39-212ENST00000570023 TCF12Q99081 682 aa5.59□□□□□ -1.51
VPS39-212ENST00000570023 PRDM4Q9UKN5 801 aa5.59□□□□□ -1.51
VPS39-212ENST00000570023 FAM177BA6PVY3 158 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 H3BRJ5 948 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 FSCN2O14926 492 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 GATA4P43694 442 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 CABP4P57796 275 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 PIP4K2BP78356 416 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 PLCB3Q01970 1234 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 SND1Q7KZF4 910 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS39-212ENST00000570023 VN1R5Q7Z5H4 357 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 AEBP1Q8IUX7 1158 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 ZSCAN29Q8IWY8 852 aaPredicted RBP5.58□□□□□ -1.52
VPS39-212ENST00000570023 KLHL23Q8NBE8 558 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 ASB16Q96NS5 453 aa5.58□□□□□ -1.52
VPS39-212ENST00000570023 ENOX2Q16206 610 aaKnown RBP5.57□□□□□ -1.52
VPS39-212ENST00000570023 FAM117BQ6P1L5 589 aa5.57□□□□□ -1.52
VPS39-212ENST00000570023 TXNDC11Q6PKC3 985 aa5.57□□□□□ -1.52
VPS39-212ENST00000570023 TXNRD3Q86VQ6 643 aa5.57□□□□□ -1.52
VPS39-212ENST00000570023 ANP32BQ92688 251 aaKnown RBP5.57□□□□□ -1.52
VPS39-212ENST00000570023 MRPL18Q9H0U6 180 aaKnown RBP5.57□□□□□ -1.52
VPS39-212ENST00000570023 LIN7BQ9HAP6 207 aa5.57□□□□□ -1.52
VPS39-212ENST00000570023 OSGEPQ9NPF4 335 aa5.57□□□□□ -1.52
VPS39-212ENST00000570023 SEC31BQ9NQW1 1179 aa5.57□□□□□ -1.52
VPS39-212ENST00000570023 USP21Q9UK80 565 aa5.57□□□□□ -1.52
VPS39-212ENST00000570023 CD68P34810 354 aaPredicted RBP5.56□□□□□ -1.52
VPS39-212ENST00000570023 FMR1Q06787 632 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS39-212ENST00000570023 TICAM2Q86XR7 235 aa5.56□□□□□ -1.52
VPS39-212ENST00000570023 WFDC12Q8WWY7 111 aa5.56□□□□□ -1.52
VPS39-212ENST00000570023 KLHDC7BQ96G42 594 aa5.56□□□□□ -1.52
VPS39-212ENST00000570023 SSBP4Q9BWG4 385 aaPredicted RBP5.56□□□□□ -1.52
VPS39-212ENST00000570023 PDCL3Q9H2J4 239 aa5.56□□□□□ -1.52
VPS39-212ENST00000570023 SOX17Q9H6I2 414 aaPredicted RBP5.56□□□□□ -1.52
VPS39-212ENST00000570023 NPHS2Q9NP85 383 aa5.56□□□□□ -1.52
VPS39-212ENST00000570023 SHROOM4Q9ULL8 1493 aa5.56□□□□□ -1.52
VPS39-212ENST00000570023 A0A096LPE4 126 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 A0A1W2PPZ6 126 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 F8W735 103 aaPredicted RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 SOX1O00570 391 aaPredicted RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 NEFMP07197 916 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 NOS3P29474 1203 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 CDC25BP30305 580 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 GRIA4P48058 902 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 PTPN12Q05209 780 aaKnown RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 IKBKEQ14164 716 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 SUZ12Q15022 739 aaKnown RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 FOXD4L6Q3SYB3 417 aaPredicted RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 PRPF40BQ6NWY9 871 aaKnown RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 FOXD4L3Q6VB84 417 aaPredicted RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 Q6ZS46 218 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 ASAP3Q8TDY4 903 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 EPS8L3Q8TE67 593 aaKnown RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 CARD10Q9BWT7 1032 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 KCNK4Q9NYG8 393 aa5.55□□□□□ -1.52
VPS39-212ENST00000570023 CCDC9Q9Y3X0 531 aaKnown RBP5.55□□□□□ -1.52
VPS39-212ENST00000570023 METTL12A8MUP2 240 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 EIF4EBP3O60516 100 aaPredicted RBP5.54□□□□□ -1.52
VPS39-212ENST00000570023 ADAM11O75078 769 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 PTMAP06454 111 aaKnown RBP5.54□□□□□ -1.52
VPS39-212ENST00000570023 ESRRAP11474 423 aaPredicted RBP5.54□□□□□ -1.52
VPS39-212ENST00000570023 PTMSP20962 102 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 ITPKAP23677 461 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 C19orf57Q0VDD7 668 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 SPRED3Q2MJR0 410 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.54□□□□□ -1.52
VPS39-212ENST00000570023 GLIS3Q8NEA6 775 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 FOXD4L4Q8WXT5 416 aaPredicted RBP5.54□□□□□ -1.52
VPS39-212ENST00000570023 EHD4Q9H223 541 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 CHMP4BQ9H444 224 aaKnown RBP5.54□□□□□ -1.52
VPS39-212ENST00000570023 AKTIPQ9H8T0 292 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 TPSG1Q9NRR2 321 aa5.54□□□□□ -1.52
VPS39-212ENST00000570023 PNMA6FA0A0J9YX94 578 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 CLGNO14967 610 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 CLSTN1O94985 981 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 IREB2P48200 963 aaKnown RBP5.53□□□□□ -1.52
VPS39-212ENST00000570023 ARL4DP49703 201 aa5.53□□□□□ -1.52
VPS39-212ENST00000570023 DOC2BQ14184 412 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms