RNA–Protein interactions for RNA: ENST00000569784.1

SCAPER-223, Transcript of S-phase cyclin A associated protein in the ER, human

TSL 4

Gene SCAPER, Length 580 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAPER-223	ENST00000569784	NOG	Q13253	232 aa		10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	PODN	Q7Z5L7	613 aa		10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	AGBL3	Q8NEM8	1001 aa		10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	DNAAF4	Q8WXU2	420 aa		10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	HHIPL1	Q96JK4	782 aa		10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	ANKRD2	Q9GZV1	360 aa		10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	GREM2	Q9H772	168 aa		10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	BSDC1	Q9NW68	430 aa	Predicted RBP	10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	HDAC9	Q9UKV0	1011 aa		10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	POLR2A	P24928	1970 aa	Known RBP	10.85	□□□□□ -0.67
SCAPER-223	ENST00000569784	ANKRD18B	A2A2Z9	1011 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	CCDC85C	A6NKD9	419 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	IGKV5-2	P06315	115 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	ITGA6	P23229	1130 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	NF2	P35240	595 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	CCT4	P50991	539 aa	Known RBP	10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	SCARF1	Q14162	830 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	ANGEL2	Q5VTE6	544 aa	Known RBP	10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	RGMB	Q6NW40	437 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	WDR63	Q8IWG1	891 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	TTLL11	Q8NHH1	800 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	CCDC102A	Q96A19	550 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	CACNA1F	O60840	1977 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	FANCI	Q9NVI1	1328 aa		10.84	□□□□□ -0.67
SCAPER-223	ENST00000569784	RTL9	Q8NET4	1388 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	BRPF1	P55201	1214 aa	Predicted RBP	10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	EXOSC9	Q06265	439 aa	Known RBP	10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	GCKR	Q14397	625 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	SLC4A10	Q6U841	1118 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	G2E3	Q7L622	706 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	LINS1	Q8NG48	757 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	MYOZ2	Q9NPC6	264 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	MINPP1	Q9UNW1	487 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	LEMD3	Q9Y2U8	911 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	MYO3B	Q8WXR4	1341 aa		10.83	□□□□□ -0.68
SCAPER-223	ENST00000569784	COL4A1	P02462	1669 aa		10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	MED23	Q9ULK4	1368 aa		10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784		H7C1W4	665 aa		10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	EGFR	P00533	1210 aa		10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	IFIT5	Q13325	482 aa	Known RBP	10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	CDCA5	Q96FF9	252 aa		10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	COA1	Q9GZY4	146 aa		10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	ZNF804B	A4D1E1	1349 aa		10.82	□□□□□ -0.68
SCAPER-223	ENST00000569784	THSD7B	Q9C0I4	1608 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	PLIN1	O60240	522 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	CCDC57	Q2TAC2	916 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	FAM161A	Q3B820	660 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	TTLL5	Q6EMB2	1281 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	DLK2	Q6UY11	383 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	MAMSTR	Q6ZN01	415 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	ABHD8	Q96I13	439 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	CNNM1	Q9NRU3	951 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	PSME4	Q14997	1843 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	SCN9A	Q15858	1988 aa		10.81	□□□□□ -0.68
SCAPER-223	ENST00000569784	AKAP11	Q9UKA4	1901 aa		10.8	□□□□□ -0.68
SCAPER-223	ENST00000569784	VAMP4	O75379	141 aa		10.8	□□□□□ -0.68
SCAPER-223	ENST00000569784	DGKZ	Q13574	1117 aa		10.8	□□□□□ -0.68
SCAPER-223	ENST00000569784	SCUBE2	Q9NQ36	999 aa		10.8	□□□□□ -0.68
SCAPER-223	ENST00000569784	C2orf72	A6NCS6	295 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784		F6X3S4	739 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	MYO1B	O43795	1136 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	RBM5	P52756	815 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	ZNF280A	P59817	542 aa	Predicted RBP	10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	GTF2I	P78347	998 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	KIF23	Q02241	960 aa	Predicted RBP	10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	CHRND	Q07001	517 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	STRIP1	Q5VSL9	837 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	ZNF804A	Q7Z570	1209 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	KIAA0825	Q8IV33	1275 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	SLAIN1	Q8ND83	568 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	CRISPLD2	Q9H0B8	497 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	ASTN2	O75129	1339 aa	Predicted RBP	10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	PITPNM2	Q9BZ72	1349 aa		10.79	□□□□□ -0.68
SCAPER-223	ENST00000569784	TAF5L	O75529	589 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	TRPA1	O75762	1119 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	SASH1	O94885	1247 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	MMP14	P50281	582 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	FKBP1B	P68106	108 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	PRKG1	Q13976	671 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	DLGAP5	Q15398	846 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	LDHAL6A	Q6ZMR3	332 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	ARMC9	Q7Z3E5	817 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	HELB	Q8NG08	1087 aa	Predicted RBP	10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	MXD3	Q9BW11	206 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	PLA2G12B	Q9BX93	195 aa		10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784	SCAF8	Q9UPN6	1271 aa	Known RBP	10.78	□□□□□ -0.68
SCAPER-223	ENST00000569784		F8W031	263 aa	Predicted RBP	10.77	□□□□□ -0.69
SCAPER-223	ENST00000569784	FRAT2	O75474	233 aa	Predicted RBP	10.77	□□□□□ -0.69
SCAPER-223	ENST00000569784	NBPF9	Q3BBW0	867 aa		10.77	□□□□□ -0.69
SCAPER-223	ENST00000569784	LMBR1L	Q6UX01	489 aa		10.77	□□□□□ -0.69
SCAPER-223	ENST00000569784	VPS37D	Q86XT2	251 aa		10.77	□□□□□ -0.69
SCAPER-223	ENST00000569784	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.77	□□□□□ -0.69
SCAPER-223	ENST00000569784	SRCIN1	Q9C0H9	1055 aa		10.77	□□□□□ -0.69
SCAPER-223	ENST00000569784	CASP8AP2	Q9UKL3	1982 aa		10.77	□□□□□ -0.69
SCAPER-223	ENST00000569784	PAPPA2	Q9BXP8	1791 aa		10.76	□□□□□ -0.69
SCAPER-223	ENST00000569784	WTIP	A6NIX2	430 aa	Predicted RBP	10.76	□□□□□ -0.69
SCAPER-223	ENST00000569784	UBE2Q2L	H0YL09	131 aa		10.76	□□□□□ -0.69
SCAPER-223	ENST00000569784	GRM8	O00222	908 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms