RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CLNS1AP54105 237 aaKnown RBP12.51□□□□□ -0.41
CLK3-226ENST00000569406 ATP8B2P98198 1209 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 TSHZ1Q6ZSZ6 1077 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 PSD3Q9NYI0 1048 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 OVOS2A0A0G2JMS6 1433 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 PRAMEF22A3QJZ6 481 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 GNL2Q13823 731 aaKnown RBP12.51□□□□□ -0.41
CLK3-226ENST00000569406 ISM2Q6H9L7 571 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 PYGLP06737 847 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 RPS6KA3P51812 740 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 KCNV1Q6PIU1 500 aa12.51□□□□□ -0.41
CLK3-226ENST00000569406 MKRN1Q9UHC7 482 aaKnown RBP12.51□□□□□ -0.41
CLK3-226ENST00000569406 POLA2Q14181 598 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 CACTINQ8WUQ7 758 aaKnown RBP12.5□□□□□ -0.41
CLK3-226ENST00000569406 GNAI2P04899 355 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 PAX3P23760 479 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 PSME1Q06323 249 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 USP48Q86UV5 1035 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 UNC5CLQ8IV45 518 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 ANKRD18BA2A2Z9 1011 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 SETSIPP0DME0 302 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 NAA25Q14CX7 972 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 BEND3Q5T5X7 828 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 MICAL1Q8TDZ2 1067 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 BAG1Q99933 345 aaPredicted RBP12.5□□□□□ -0.41
CLK3-226ENST00000569406 EPC1Q9H2F5 836 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 MRFAP1Q9Y605 127 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 CCDC171Q6TFL3 1326 aa12.5□□□□□ -0.41
CLK3-226ENST00000569406 SNUPNO95149 360 aaKnown RBP12.49□□□□□ -0.41
CLK3-226ENST00000569406 NBPF7P0C2Y1 421 aaPredicted RBP12.49□□□□□ -0.41
CLK3-226ENST00000569406 TEX13AQ9BXU3 409 aaPredicted RBP12.49□□□□□ -0.41
CLK3-226ENST00000569406 TMEM165Q9HC07 324 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 CHPF2Q9P2E5 772 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 ENO4A6NNW6 628 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 EIF5P55010 431 aaKnown RBP12.49□□□□□ -0.41
CLK3-226ENST00000569406 PROSER3Q2NL68 480 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 ARL10Q8N8L6 244 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 KCNH5Q8NCM2 988 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 SSH3Q8TE77 659 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 CRACR2AQ9BSW2 395 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 CD248Q9HCU0 757 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 KDM6AO15550 1401 aaPredicted RBP12.49□□□□□ -0.41
CLK3-226ENST00000569406 TBC1D8O95759 1140 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 FAM163BP0C2L3 166 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 TBC1D25Q3MII6 688 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 AKAP4Q5JQC9 854 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 ATL2Q8NHH9 583 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 TACO1Q9BSH4 297 aaKnown RBP12.49□□□□□ -0.41
CLK3-226ENST00000569406 MAF1Q9H063 256 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 CHCHD3Q9NX63 227 aaKnown RBP12.49□□□□□ -0.41
CLK3-226ENST00000569406 STAP2Q9UGK3 403 aa12.49□□□□□ -0.41
CLK3-226ENST00000569406 PPFIA2O75334 1257 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 MPRIPQ6WCQ1 1025 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 STAG1Q8WVM7 1258 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 ANXA1P04083 346 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 MX1P20591 662 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 HDGFL1Q5TGJ6 251 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 MYLK4Q86YV6 388 aaPredicted RBP12.48□□□□□ -0.41
CLK3-226ENST00000569406 PKD1L3Q7Z443 1732 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 A0A1B0GUA9 196 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 RNMTO43148 476 aaKnown RBP12.48□□□□□ -0.41
CLK3-226ENST00000569406 ST18O60284 1047 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 MCM2P49736 904 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 CRYMQ14894 314 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 PDIA6Q15084 440 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 DDX11Q96FC9 970 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 STK31Q9BXU1 1019 aa12.48□□□□□ -0.41
CLK3-226ENST00000569406 H3BQF6 201 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 OATP04181 439 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 HOXB7P09629 217 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 SKILP12757 684 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 GRIK3Q13003 919 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 ZRSR2Q15696 482 aaKnown RBP12.47□□□□□ -0.41
CLK3-226ENST00000569406 DDX17Q92841 729 aaKnown RBP12.47□□□□□ -0.41
CLK3-226ENST00000569406 ARHGEF1Q92888 912 aaKnown RBP12.47□□□□□ -0.41
CLK3-226ENST00000569406 RILPL2Q969X0 211 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 IL17RAQ96F46 866 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.47□□□□□ -0.41
CLK3-226ENST00000569406 PHACTR2O75167 634 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 USP4Q13107 963 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 MCM6Q14566 821 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 HHATQ5VTY9 493 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 ARFGAP3Q9NP61 516 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 ORC3Q9UBD5 711 aaPredicted RBP12.47□□□□□ -0.41
CLK3-226ENST00000569406 MCM8Q9UJA3 840 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLK3-226ENST00000569406 MEGF6O75095 1541 aa12.47□□□□□ -0.41
CLK3-226ENST00000569406 GPTP24298 496 aa12.46□□□□□ -0.41
CLK3-226ENST00000569406 LUZP1Q86V48 1076 aa12.46□□□□□ -0.41
CLK3-226ENST00000569406 ANKRD24Q8TF21 1146 aa12.46□□□□□ -0.41
CLK3-226ENST00000569406 CLIP2Q9UDT6 1046 aa12.46□□□□□ -0.41
CLK3-226ENST00000569406 PES1O00541 588 aaKnown RBP12.46□□□□□ -0.41
CLK3-226ENST00000569406 ABCC6O95255 1503 aa12.46□□□□□ -0.42
CLK3-226ENST00000569406 GIGYF1O75420 1035 aaPredicted RBP12.46□□□□□ -0.42
CLK3-226ENST00000569406 CEP57Q86XR8 500 aa12.46□□□□□ -0.42
CLK3-226ENST00000569406 KAZALD1Q96I82 304 aa12.46□□□□□ -0.42
CLK3-226ENST00000569406 CENPHQ9H3R5 247 aa12.46□□□□□ -0.42
CLK3-226ENST00000569406 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.46□□□□□ -0.425e-7■■□□□ 12.3
CLK3-226ENST00000569406 ARID5BQ14865 1188 aa12.45□□□□□ -0.42
CLK3-226ENST00000569406 LRP10Q7Z4F1 713 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms