RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 CDC5LQ99459 802 aaKnown RBP13.43□□□□□ -0.26
SF3B3-204ENST00000563739 RNF216Q9NWF9 866 aaPredicted RBP13.43□□□□□ -0.26
SF3B3-204ENST00000563739 COLQQ9Y215 455 aaPredicted RBP13.43□□□□□ -0.26
SF3B3-204ENST00000563739 MYBBP1AQ9BQG0 1328 aaKnown RBP13.42□□□□□ -0.26
SF3B3-204ENST00000563739 NEURL1BA8MQ27 555 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 H7C1W4 665 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 USP2O75604 605 aaPredicted RBP13.42□□□□□ -0.26
SF3B3-204ENST00000563739 NF2P35240 595 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 RALBP1Q15311 655 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 INTS3Q68E01 1043 aaKnown RBP13.42□□□□□ -0.26
SF3B3-204ENST00000563739 TTLL5Q6EMB2 1281 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 G2E3Q7L622 706 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 MS4A4AQ96JQ5 239 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 CD209Q9NNX6 404 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 IFT57Q9NWB7 429 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 LEMD3Q9Y2U8 911 aa13.42□□□□□ -0.26
SF3B3-204ENST00000563739 CLRN2A0PK11 232 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 PI4KAP2A4QPH2 592 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 SPDYE2BA6NHP3 402 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 SPDYE6P0CI01 402 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 OGFOD1Q8N543 542 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 PI4KAP1Q8N8J0 262 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 OTUD5Q96G74 571 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 PRMT6Q96LA8 375 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-204ENST00000563739 PLA2G12BQ9BX93 195 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 PTCH2Q9Y6C5 1203 aa13.41□□□□□ -0.26
SF3B3-204ENST00000563739 CSF1RP07333 972 aa13.4□□□□□ -0.26
SF3B3-204ENST00000563739 HSP90B1P14625 803 aaKnown RBP13.4□□□□□ -0.26
SF3B3-204ENST00000563739 MMP14P50281 582 aa13.4□□□□□ -0.26
SF3B3-204ENST00000563739 KSR2Q6VAB6 950 aa13.4□□□□□ -0.26
SF3B3-204ENST00000563739 C15orf52Q6ZUT6 534 aaKnown RBP13.4□□□□□ -0.26
SF3B3-204ENST00000563739 BRI3BPQ8WY22 251 aa13.4□□□□□ -0.26
SF3B3-204ENST00000563739 SHISA4Q96DD7 197 aa13.4□□□□□ -0.26
SF3B3-204ENST00000563739 SLC10A4Q96EP9 437 aa13.4□□□□□ -0.26
SF3B3-204ENST00000563739 ERO1AQ96HE7 468 aa13.4□□□□□ -0.26
SF3B3-204ENST00000563739 TEPSINQ96N21 525 aa13.4□□□□□ -0.26
SF3B3-204ENST00000563739 ALPK3Q96L96 1907 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 ITGA6P23229 1130 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 INHBEP58166 350 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 CHRNDQ07001 517 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 CFAP100Q494V2 611 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 UBE3BQ7Z3V4 1068 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 ARHGAP39Q9C0H5 1083 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 EFCC1Q9HA90 598 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 PPP2R3BQ9Y5P8 575 aa13.39□□□□□ -0.27
SF3B3-204ENST00000563739 IL1R1P14778 569 aa13.38□□□□□ -0.27
SF3B3-204ENST00000563739 SP3Q02447 781 aa13.38□□□□□ -0.27
SF3B3-204ENST00000563739 DLGAP5Q15398 846 aa13.38□□□□□ -0.27
SF3B3-204ENST00000563739 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.38□□□□□ -0.27
SF3B3-204ENST00000563739 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.38□□□□□ -0.27
SF3B3-204ENST00000563739 JAG2Q9Y219 1238 aa13.38□□□□□ -0.27
SF3B3-204ENST00000563739 UNCXA6NJT0 531 aa13.37□□□□□ -0.27
SF3B3-204ENST00000563739 APAF1O14727 1248 aa13.37□□□□□ -0.27
SF3B3-204ENST00000563739 CTGFP29279 349 aa13.37□□□□□ -0.27
SF3B3-204ENST00000563739 HOXD11P31277 338 aaPredicted RBP13.37□□□□□ -0.27
SF3B3-204ENST00000563739 RASA3Q14644 834 aa13.37□□□□□ -0.27
SF3B3-204ENST00000563739 FAM43AQ8N2R8 423 aa13.37□□□□□ -0.27
SF3B3-204ENST00000563739 PRO3102Q9H379 93 aa13.37□□□□□ -0.27
SF3B3-204ENST00000563739 ELP3Q9H9T3 547 aa13.37□□□□□ -0.27
SF3B3-204ENST00000563739 CACNA1FO60840 1977 aa13.37□□□□□ -0.27
SF3B3-204ENST00000563739 F8W031 263 aaPredicted RBP13.36□□□□□ -0.27
SF3B3-204ENST00000563739 H0YGN5 161 aa13.36□□□□□ -0.27
SF3B3-204ENST00000563739 TAF5LO75529 589 aa13.36□□□□□ -0.27
SF3B3-204ENST00000563739 GNAI1P63096 354 aa13.36□□□□□ -0.27
SF3B3-204ENST00000563739 GCKRQ14397 625 aa13.36□□□□□ -0.27
SF3B3-204ENST00000563739 GRIK5Q16478 980 aa13.36□□□□□ -0.27
SF3B3-204ENST00000563739 HELBQ8NG08 1087 aaPredicted RBP13.36□□□□□ -0.27
SF3B3-204ENST00000563739 TSR2Q969E8 191 aaKnown RBP13.36□□□□□ -0.27
SF3B3-204ENST00000563739 OPTNQ96CV9 577 aa13.36□□□□□ -0.27
SF3B3-204ENST00000563739 IGHMBP2P38935 993 aaKnown RBP13.35□□□□□ -0.27
SF3B3-204ENST00000563739 FKBP1AP62942 108 aaKnown RBP13.35□□□□□ -0.27
SF3B3-204ENST00000563739 FOXO4P98177 505 aa13.35□□□□□ -0.27
SF3B3-204ENST00000563739 SPDYE2Q495Y8 402 aa13.35□□□□□ -0.27
SF3B3-204ENST00000563739 UBE2Q1Q7Z7E8 422 aa13.35□□□□□ -0.27
SF3B3-204ENST00000563739 ANKRD13AQ8IZ07 590 aa13.35□□□□□ -0.27
SF3B3-204ENST00000563739 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.35□□□□□ -0.27
SF3B3-204ENST00000563739 ANKRD2Q9GZV1 360 aa13.35□□□□□ -0.27
SF3B3-204ENST00000563739 MGAMO43451 1857 aa13.35□□□□□ -0.27
SF3B3-204ENST00000563739 PPP1R12BO60237 982 aaPredicted RBP13.34□□□□□ -0.27
SF3B3-204ENST00000563739 DDX58O95786 925 aaKnown RBP13.34□□□□□ -0.27
SF3B3-204ENST00000563739 VGLL4Q14135 290 aa13.34□□□□□ -0.27
SF3B3-204ENST00000563739 EPHA10Q5JZY3 1008 aa13.34□□□□□ -0.27
SF3B3-204ENST00000563739 CCDC30Q5VVM6 783 aa13.34□□□□□ -0.27
SF3B3-204ENST00000563739 SH3TC2Q8TF17 1288 aa13.34□□□□□ -0.27
SF3B3-204ENST00000563739 VEZTQ9HBM0 779 aa13.34□□□□□ -0.27
SF3B3-204ENST00000563739 ZNF70Q9UC06 446 aaPredicted RBP13.34□□□□□ -0.27
SF3B3-204ENST00000563739 FAM205AQ6ZU69 1335 aa13.34□□□□□ -0.27
SF3B3-204ENST00000563739 ADGRA2Q96PE1 1338 aa13.34□□□□□ -0.27
SF3B3-204ENST00000563739 IREB2P48200 963 aaKnown RBP13.33□□□□□ -0.28
SF3B3-204ENST00000563739 WDR43Q15061 677 aaKnown RBP eCLIP13.33□□□□□ -0.28
SF3B3-204ENST00000563739 SNCAIPQ9Y6H5 919 aa13.33□□□□□ -0.28
SF3B3-204ENST00000563739 MTFR1Q15390 333 aa13.32□□□□□ -0.28
SF3B3-204ENST00000563739 TAF1CQ15572 869 aaPredicted RBP13.32□□□□□ -0.28
SF3B3-204ENST00000563739 TMEM39BQ9GZU3 492 aa13.32□□□□□ -0.28
SF3B3-204ENST00000563739 TDRD3Q9H7E2 651 aaKnown RBP13.32□□□□□ -0.28
SF3B3-204ENST00000563739 RBM27Q9P2N5 1060 aaKnown RBP13.32□□□□□ -0.28
SF3B3-204ENST00000563739 PTPRFP10586 1907 aa13.31□□□□□ -0.28
SF3B3-204ENST00000563739 CCL15-CCL14A0A0B4J2E2 113 aa13.31□□□□□ -0.28
SF3B3-204ENST00000563739 MYCP01106 439 aaPredicted RBP13.31□□□□□ -0.28
SF3B3-204ENST00000563739 CCL15Q16663 113 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms