RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 XDHP47989 1333 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 BECN2A8MW95 431 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 K7ELQ4 463 aaPredicted RBP10.82□□□□□ -0.68
VPS39-205ENST00000562258 NPR1P16066 1061 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 PDE4CQ08493 712 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 TTC6Q86TZ1 520 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 CDKL5O76039 1030 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 ME1P48163 572 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 TEKT1Q969V4 418 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 MCM5P33992 734 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 DHX8Q14562 1220 aaKnown RBP10.82□□□□□ -0.68
VPS39-205ENST00000562258 IFIT1BQ5T764 474 aaKnown RBP10.82□□□□□ -0.68
VPS39-205ENST00000562258 SDR42E1Q8WUS8 393 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 LAMC1P11047 1609 aa10.82□□□□□ -0.68
VPS39-205ENST00000562258 CPDO75976 1380 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 TAOK3Q9H2K8 898 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 DBNLQ9UJU6 430 aaKnown RBP10.81□□□□□ -0.68
VPS39-205ENST00000562258 CCDC196A0A1B0GTZ2 297 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 KRT18P05783 430 aaKnown RBP10.81□□□□□ -0.68
VPS39-205ENST00000562258 COL23A1Q86Y22 540 aaPredicted RBP10.81□□□□□ -0.68
VPS39-205ENST00000562258 TRMT2AQ8IZ69 625 aaKnown RBP10.81□□□□□ -0.68
VPS39-205ENST00000562258 KBTBD3Q8NAB2 608 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 COPRSQ9NQ92 184 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 GOLGA6L6A8MZA4 724 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 NRDCO43847 1150 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 CHMLP26374 656 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 PTPN12Q05209 780 aaKnown RBP10.81□□□□□ -0.68
VPS39-205ENST00000562258 GRAPQ13588 217 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 DIXDC1Q155Q3 683 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 GRAPLQ8TC17 118 aaPredicted RBP10.81□□□□□ -0.68
VPS39-205ENST00000562258 SLC26A6Q9BXS9 759 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 RNF181Q9P0P0 153 aa10.81□□□□□ -0.68
VPS39-205ENST00000562258 B4E1Z4 1266 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 SULF1Q8IWU6 871 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 TBC1D22AQ8WUA7 517 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 DEPDC5O75140 1603 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 USP17L12C9JPN9 530 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 USP17L21D6R901 530 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 H7C1W4 665 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 IARSP41252 1262 aaKnown RBP10.8□□□□□ -0.68
VPS39-205ENST00000562258 NLRP5P59047 1200 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 UBE4AQ14139 1066 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 ANTXR1Q9H6X2 564 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 PRPF40AO75400 957 aaKnown RBP10.8□□□□□ -0.68
VPS39-205ENST00000562258 APPBP2Q92624 585 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 HMGB1P09429 215 aaKnown RBP10.8□□□□□ -0.68
VPS39-205ENST00000562258 METAP2P50579 478 aaKnown RBP eCLIP10.8□□□□□ -0.68
VPS39-205ENST00000562258 PRR5LQ6MZQ0 368 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 C8orf76Q96K31 380 aa10.8□□□□□ -0.68
VPS39-205ENST00000562258 ORC3Q9UBD5 711 aaPredicted RBP10.8□□□□□ -0.68
VPS39-205ENST00000562258 PRC1O43663 620 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 CACNB3P54284 484 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 AOC3Q16853 763 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 CCDC47Q96A33 483 aaKnown RBP10.79□□□□□ -0.68
VPS39-205ENST00000562258 ZSCAN31Q96LW9 406 aaPredicted RBP10.79□□□□□ -0.68
VPS39-205ENST00000562258 CCDC171Q6TFL3 1326 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 MEGF6O75095 1541 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 ZBTB43O43298 467 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 CPXCR1Q8N123 301 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 PICK1Q9NRD5 415 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 LIMCH1Q9UPQ0 1083 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 REREQ9P2R6 1566 aa10.79□□□□□ -0.68
VPS39-205ENST00000562258 CTDSPL2Q05D32 466 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 LEMD3Q9Y2U8 911 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 KIF5BP33176 963 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 BRIP1Q9BX63 1249 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 KRT23Q9C075 422 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 MINPP1Q9UNW1 487 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 CAMTA2O94983 1202 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 TPM4P67936 248 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 MKRN3Q13064 507 aaKnown RBP10.78□□□□□ -0.68
VPS39-205ENST00000562258 TBC1D10BQ4KMP7 808 aaPredicted RBP10.78□□□□□ -0.68
VPS39-205ENST00000562258 Q6ZUG5 572 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 GPCPD1Q9NPB8 672 aa10.78□□□□□ -0.68
VPS39-205ENST00000562258 PDE6AP16499 860 aa10.77□□□□□ -0.68
VPS39-205ENST00000562258 FAM47AQ5JRC9 791 aa10.77□□□□□ -0.68
VPS39-205ENST00000562258 DCPSQ96C86 337 aaKnown RBP10.77□□□□□ -0.68
VPS39-205ENST00000562258 TFIP11Q9UBB9 837 aaKnown RBP10.77□□□□□ -0.68
VPS39-205ENST00000562258 MYO5BQ9ULV0 1848 aa10.77□□□□□ -0.68
VPS39-205ENST00000562258 CARMIL3Q8ND23 1372 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 CCDC194A0A1B0GVG4 234 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 GOLGA6L19H0YKK7 550 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 SEC24BO95487 1268 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 GNAT2P19087 354 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 NKX1-1Q15270 411 aaPredicted RBP10.77□□□□□ -0.69
VPS39-205ENST00000562258 PCMTD1Q96MG8 357 aaPredicted RBP10.77□□□□□ -0.69
VPS39-205ENST00000562258 PANK2Q9BZ23 570 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 ATP5JP18859 108 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 SSRP1Q08945 709 aaKnown RBP10.77□□□□□ -0.69
VPS39-205ENST00000562258 TNIP1Q15025 636 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 CREB3L3Q68CJ9 461 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 CIAPIN1Q6FI81 312 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 ISCA1Q9BUE6 129 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 BIN2Q9UBW5 565 aaPredicted RBP10.77□□□□□ -0.69
VPS39-205ENST00000562258 NOL7Q9UMY1 257 aaKnown RBP10.77□□□□□ -0.69
VPS39-205ENST00000562258 MAST3O60307 1309 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 NCAPD2Q15021 1401 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 CD163L1Q9NR16 1453 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 SASH1O94885 1247 aa10.77□□□□□ -0.69
VPS39-205ENST00000562258 TXLNAP40222 546 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms