RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 NLRP2Q9NX02 1062 aa16.23■□□□□ 0.19
VPS9D1-202ENST00000561976 MAST3O60307 1309 aa16.23■□□□□ 0.19
VPS9D1-202ENST00000561976 IFIT1P09914 478 aaKnown RBP16.23■□□□□ 0.19
VPS9D1-202ENST00000561976 SYNE3Q6ZMZ3 975 aa16.23■□□□□ 0.19
VPS9D1-202ENST00000561976 HOMER1Q86YM7 354 aa16.23■□□□□ 0.19
VPS9D1-202ENST00000561976 RNF113AO15541 343 aaKnown RBP16.22■□□□□ 0.19
VPS9D1-202ENST00000561976 TERF2Q15554 542 aa16.22■□□□□ 0.19
VPS9D1-202ENST00000561976 ERCC6LQ2NKX8 1250 aa16.22■□□□□ 0.19
VPS9D1-202ENST00000561976 ISM2Q6H9L7 571 aa16.22■□□□□ 0.19
VPS9D1-202ENST00000561976 LAMA4Q16363 1823 aa16.22■□□□□ 0.19
VPS9D1-202ENST00000561976 ZC3H6P61129 1189 aaKnown RBP16.22■□□□□ 0.19
VPS9D1-202ENST00000561976 HAND2P61296 217 aa16.22■□□□□ 0.19
VPS9D1-202ENST00000561976 RAB11FIP4Q86YS3 637 aa16.22■□□□□ 0.19
VPS9D1-202ENST00000561976 SIPA1L3O60292 1781 aaPredicted RBP16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 ZNF202O95125 648 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 BPIFA3Q9BQP9 254 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 ORC3Q9UBD5 711 aaPredicted RBP16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 TAOK2Q9UL54 1235 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 PSDA5PKW4 1024 aaPredicted RBP16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 CPLX1O14810 134 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 YEATS4O95619 227 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 LMOD1P29536 600 aaPredicted RBP16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 NLRP12P59046 1061 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 GORABQ5T7V8 394 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 LRP10Q7Z4F1 713 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 C5P01031 1676 aa16.21■□□□□ 0.19
VPS9D1-202ENST00000561976 M0R2C6 588 aa16.21■□□□□ 0.18
VPS9D1-202ENST00000561976 DHX16O60231 1041 aaKnown RBP16.21■□□□□ 0.18
VPS9D1-202ENST00000561976 PHKG2P15735 406 aa16.21■□□□□ 0.18
VPS9D1-202ENST00000561976 TATP17735 454 aaPredicted RBP16.21■□□□□ 0.18
VPS9D1-202ENST00000561976 TAF3Q5VWG9 929 aa16.21■□□□□ 0.18
VPS9D1-202ENST00000561976 ATG9AQ7Z3C6 839 aa16.21■□□□□ 0.18
VPS9D1-202ENST00000561976 PHRF1Q9P1Y6 1649 aaKnown RBP16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 ERBB3P21860 1342 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 KLF18A0A0U1RQI7 1052 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 GOLGA8BA8MQT2 603 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 FKBP4Q02790 459 aaKnown RBP eCLIP16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 MYSM1Q5VVJ2 828 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 GJB4Q9NTQ9 266 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 POLR3EQ9NVU0 708 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 KDM6AO15550 1401 aaPredicted RBP16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 WASHC4Q2M389 1173 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 FBXO18Q8NFZ0 1043 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 PLBD2Q8NHP8 589 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 L2HGDHQ9H9P8 463 aa16.2■□□□□ 0.18
VPS9D1-202ENST00000561976 IL15P40933 162 aaPredicted RBP16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 CASP7P55210 303 aa16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 DHX8Q14562 1220 aaKnown RBP16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 PRC1O43663 620 aa16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 FOXO4P98177 505 aa16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 FANCCQ00597 558 aa16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 IMMTQ16891 758 aaKnown RBP16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 BRAPQ7Z569 592 aa16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 LRRN4CLQ8ND94 238 aa16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 ZNF594Q96JF6 807 aaPredicted RBP16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 ZNF446Q9NWS9 450 aa16.19■□□□□ 0.18
VPS9D1-202ENST00000561976 PFKFB1P16118 471 aa16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 MARCKSP29966 332 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 BMS1Q14692 1282 aaKnown RBP16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 LRRC24Q50LG9 513 aa16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 IFNL2Q8IZJ0 200 aa16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 OSBP2Q969R2 916 aa16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 ST7Q9NRC1 585 aa16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 AFDNP55196 1824 aaKnown RBP16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 A0A1B0GUL7 405 aa16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 TRHP20396 242 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 ANO1Q5XXA6 986 aa16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 DNAI1Q9UI46 699 aa16.18■□□□□ 0.18
VPS9D1-202ENST00000561976 SERPINC1P01008 464 aa16.17■□□□□ 0.18
VPS9D1-202ENST00000561976 NCAPHQ15003 741 aa16.17■□□□□ 0.18
VPS9D1-202ENST00000561976 ARHGAP29Q52LW3 1261 aa16.17■□□□□ 0.18
VPS9D1-202ENST00000561976 GPR108Q9NPR9 543 aa16.17■□□□□ 0.18
VPS9D1-202ENST00000561976 FAM53CQ9NYF3 392 aa16.17■□□□□ 0.18
VPS9D1-202ENST00000561976 ABCC6O95255 1503 aa16.17■□□□□ 0.18
VPS9D1-202ENST00000561976 ATP1A3P13637 1013 aa16.17■□□□□ 0.18
VPS9D1-202ENST00000561976 RALYLQ86SE5 291 aaKnown RBP16.17■□□□□ 0.18
VPS9D1-202ENST00000561976 NEDD4P46934 1319 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 KIF28PB7ZC32 967 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 H7C1W4 665 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 CCP110O43303 1012 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 CSB-PGBD3P0DP91 1061 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 CMA1P23946 247 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 KCNJ6P48051 423 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 EVCP57679 992 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 ANKLE2Q86XL3 938 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 ERICH4A6NGS2 130 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 EYA2O00167 538 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 TUBB4AP04350 444 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 H2AFXP16104 143 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 UBASH3AP57075 661 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 LRRFIP1Q32MZ4 808 aaKnown RBP16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 CCDC93Q567U6 631 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 KRT28Q7Z3Y7 464 aa16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 CWC25Q9NXE8 425 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-202ENST00000561976 CCDC66A2RUB6 948 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 SYKP43405 635 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 CLCN6P51797 869 aa16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 ETF1P62495 437 aaKnown RBP16.15■□□□□ 0.18
VPS9D1-202ENST00000561976 CFAP100Q494V2 611 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms