RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SLC9C2Q5TAH2 1124 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 ATL3Q6DD88 541 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 POTEHQ6S545 545 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 C15orf52Q6ZUT6 534 aaKnown RBP8.9□□□□□ -0.98
VPS39-204ENST00000561818 SLF2Q8IX21 1173 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 NLGN1Q8N2Q7 840 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 NCOA7Q8NI08 942 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 ARHGEF1Q92888 912 aaKnown RBP8.9□□□□□ -0.98
VPS39-204ENST00000561818 TNPO1Q92973 898 aaKnown RBP8.9□□□□□ -0.98
VPS39-204ENST00000561818 UPF3BQ9BZI7 483 aaKnown RBP8.9□□□□□ -0.98
VPS39-204ENST00000561818 TAOK2Q9UL54 1235 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 PALD1Q9ULE6 856 aa8.9□□□□□ -0.98
VPS39-204ENST00000561818 XDHP47989 1333 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 FRAT2O75474 233 aaPredicted RBP8.89□□□□□ -0.99
VPS39-204ENST00000561818 BBOX1O75936 387 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 CDKL5O76039 1030 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 CD2BP2O95400 341 aaKnown RBP8.89□□□□□ -0.99
VPS39-204ENST00000561818 BRD1O95696 1058 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 MCM5P33992 734 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 MCAMP43121 646 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 ZAP70P43403 619 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 GSTO1P78417 241 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 PTH1RQ03431 593 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 GRAPQ13588 217 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 KLHL40Q2TBA0 621 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 GRIPAP1Q4V328 841 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 TBC1D9BQ66K14 1250 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 TMTC2Q8N394 836 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 WDR66Q8TBY9 1149 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 GRAPLQ8TC17 118 aaPredicted RBP8.89□□□□□ -0.99
VPS39-204ENST00000561818 RPGRQ92834 1020 aaKnown RBP8.89□□□□□ -0.99
VPS39-204ENST00000561818 ZNF274Q96GC6 653 aaPredicted RBP8.89□□□□□ -0.99
VPS39-204ENST00000561818 RBM17Q96I25 401 aaKnown RBP8.89□□□□□ -0.99
VPS39-204ENST00000561818 TMEM87BQ96K49 555 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 AGXT2Q9BYV1 514 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 KRT23Q9C075 422 aa8.89□□□□□ -0.99
VPS39-204ENST00000561818 C4AP0C0L4 1744 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 SALL1Q9NSC2 1324 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.88□□□□□ -0.99
VPS39-204ENST00000561818 GPAA1O43292 621 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 IDH1O75874 414 aaKnown RBP8.88□□□□□ -0.99
VPS39-204ENST00000561818 SLC3A2P08195 630 aaKnown RBP8.88□□□□□ -0.99
VPS39-204ENST00000561818 RXRBP28702 533 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 CRY2Q49AN0 593 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 ERFEQ4G0M1 354 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 ZNF804AQ7Z570 1209 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 ZNF589Q86UQ0 364 aaPredicted RBP8.88□□□□□ -0.99
VPS39-204ENST00000561818 AMOTL1Q8IY63 956 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 ZSCAN16Q9H4T2 348 aaPredicted RBP8.88□□□□□ -0.99
VPS39-204ENST00000561818 LRP2BPQ9P2M1 347 aa8.88□□□□□ -0.99
VPS39-204ENST00000561818 DOCK2Q92608 1830 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 CCDC196A0A1B0GTZ2 297 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 PATL2C9JE40 543 aaKnown RBP8.87□□□□□ -0.99
VPS39-204ENST00000561818 STX6O43752 255 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 TRAK2O60296 914 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 LETM1O95202 739 aaPredicted RBP8.87□□□□□ -0.99
VPS39-204ENST00000561818 BAG4O95429 457 aaKnown RBP8.87□□□□□ -0.99
VPS39-204ENST00000561818 CYP21A2P08686 494 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 PDE6AP16499 860 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 ATP2B4P23634 1241 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 ADORA1P30542 326 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 EVCP57679 992 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 RASGRF1Q13972 1273 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 CCDC178Q5BJE1 867 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 RASEFQ8IZ41 740 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 TBC1D22AQ8WUA7 517 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 ANP32BQ92688 251 aaKnown RBP8.87□□□□□ -0.99
VPS39-204ENST00000561818 CCDC85AQ96PX6 553 aaPredicted RBP8.87□□□□□ -0.99
VPS39-204ENST00000561818 CRAMP1Q96RY5 1269 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 NOL10Q9BSC4 688 aaKnown RBP8.87□□□□□ -0.99
VPS39-204ENST00000561818 NAPBQ9H115 298 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 IL25Q9H293 177 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 ZNF287Q9HBT7 754 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 MINPP1Q9UNW1 487 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 SUGT1Q9Y2Z0 365 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.87□□□□□ -0.99
VPS39-204ENST00000561818 UBR3Q6ZT12 1888 aa8.87□□□□□ -0.99
VPS39-204ENST00000561818 ERICH2A1L162 156 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 LDHCP07864 332 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 ZSCAN22P10073 491 aaPredicted RBP8.86□□□□□ -0.99
VPS39-204ENST00000561818 PLCG2P16885 1265 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 ALDH1B1P30837 517 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 HOXA10P31260 410 aaPredicted RBP8.86□□□□□ -0.99
VPS39-204ENST00000561818 HIBADHP31937 336 aaKnown RBP8.86□□□□□ -0.99
VPS39-204ENST00000561818 PDE6BP35913 854 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 PHKA1P46020 1223 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 SYNE3Q6ZMZ3 975 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 FAM184AQ8NB25 1140 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 TMEM87AQ8NBN3 555 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 SPRYD3Q8NCJ5 442 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 WASF1Q92558 559 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 GTF3C6Q969F1 213 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 OSBP2Q969R2 916 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 BCL2L12Q9HB09 334 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 MAST2Q6P0Q8 1798 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 AKAP11Q9UKA4 1901 aa8.86□□□□□ -0.99
VPS39-204ENST00000561818 ZNF532Q9HCE3 1301 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 LAMA4Q16363 1823 aa8.85□□□□□ -0.99
VPS39-204ENST00000561818 KLRG2A4D1S0 409 aaPredicted RBP8.85□□□□□ -0.99
VPS39-204ENST00000561818 E7EWF7 191 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms