RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 RETREG2Q8NC44 543 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 NOVA2Q9UNW9 492 aaKnown RBP5.03□□□□□ -1.6
SPG11-225ENST00000561391 DCCP43146 1447 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 ATP10DQ9P241 1426 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 RIMS2Q9UQ26 1411 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 SHANK3Q9BYB0 1731 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 MARF1Q9Y4F3 1742 aaKnown RBP5.03□□□□□ -1.6
SPG11-225ENST00000561391 MTUS2Q5JR59 1369 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 PARD3Q8TEW0 1356 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 M0R082 166 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 FAM157BP0CG42 384 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 DPYDQ12882 1025 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 PTK7Q13308 1070 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 CCDC102BQ68D86 513 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 BICDL1Q6ZP65 573 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.02□□□□□ -1.61
SPG11-225ENST00000561391 TPCN2Q8NHX9 752 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 ZNF417Q8TAU3 575 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 FAM200AQ8TCP9 573 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 ZNF587Q96SQ5 575 aaPredicted RBP5.02□□□□□ -1.61
SPG11-225ENST00000561391 SLC52A1Q9NWF4 448 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 MARK1Q9P0L2 795 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 KIAA1024Q9UPX6 916 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 PCDHGA11Q9Y5H2 935 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 MYOM1P52179 1685 aa5.02□□□□□ -1.61
SPG11-225ENST00000561391 CCDC18Q5T9S5 1454 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.01□□□□□ -1.61
SPG11-225ENST00000561391 TNS1Q9HBL0 1735 aaKnown RBP5.01□□□□□ -1.61
SPG11-225ENST00000561391 ADAMTS13Q76LX8 1427 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 FAM196BA6NMK8 535 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 ZBTB7BO15156 539 aaPredicted RBP5.01□□□□□ -1.61
SPG11-225ENST00000561391 LGR5O75473 907 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 ATG7O95352 703 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 PDIA4P13667 645 aaKnown RBP5.01□□□□□ -1.61
SPG11-225ENST00000561391 SYT9Q86SS6 491 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 ANKMY2Q8IV38 441 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 LARGE2Q8N3Y3 721 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 JMYQ8N9B5 988 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.01□□□□□ -1.61
SPG11-225ENST00000561391 HINFPQ9BQA5 517 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 BTG4Q9NY30 223 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 SERTAD1Q9UHV2 236 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 PIK3R4Q99570 1358 aa5.01□□□□□ -1.61
SPG11-225ENST00000561391 COL22A1Q8NFW1 1626 aaPredicted RBP5.01□□□□□ -1.61
SPG11-225ENST00000561391 NPHP3Q7Z494 1330 aa5□□□□□ -1.61
SPG11-225ENST00000561391 NOS1P29475 1434 aa5□□□□□ -1.61
SPG11-225ENST00000561391 ARHGAP31Q2M1Z3 1444 aa5□□□□□ -1.61
SPG11-225ENST00000561391 SFI1A8K8P3 1242 aa5□□□□□ -1.61
SPG11-225ENST00000561391 GDF10P55107 478 aa5□□□□□ -1.61
SPG11-225ENST00000561391 GRIK4Q16099 956 aa5□□□□□ -1.61
SPG11-225ENST00000561391 TMEM164Q5U3C3 297 aa5□□□□□ -1.61
SPG11-225ENST00000561391 STK32AQ8WU08 396 aa5□□□□□ -1.61
SPG11-225ENST00000561391 HCN2Q9UL51 889 aa5□□□□□ -1.61
SPG11-225ENST00000561391 ZMIZ1Q9ULJ6 1067 aa5□□□□□ -1.61
SPG11-225ENST00000561391 DLC1Q96QB1 1528 aa5□□□□□ -1.61
SPG11-225ENST00000561391 NUP188Q5SRE5 1749 aa5□□□□□ -1.61
SPG11-225ENST00000561391 ZFYVE9O95405 1425 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 TRPM2O94759 1503 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 GRIN3BO60391 1043 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 INHAP05111 366 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 H2AFB1P0C5Y9 115 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 H2AFB2P0C5Z0 115 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 TXKP42681 527 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 SEC13P55735 322 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 PDE3BQ13370 1112 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 MTFR1LQ9H019 292 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 ZDHHC3Q9NYG2 299 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 CABP1Q9NZU7 370 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 RPRD2Q5VT52 1461 aaKnown RBP4.99□□□□□ -1.61
SPG11-225ENST00000561391 CCDC141Q6ZP82 1450 aa4.99□□□□□ -1.61
SPG11-225ENST00000561391 C9orf172C9J069 976 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 HYAL3O43820 417 aaPredicted RBP4.98□□□□□ -1.61
SPG11-225ENST00000561391 SIN3BO75182 1162 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 HSPA1AP0DMV8 641 aaKnown RBP4.98□□□□□ -1.61
SPG11-225ENST00000561391 HSPA1BP0DMV9 641 aaKnown RBP4.98□□□□□ -1.61
SPG11-225ENST00000561391 ELOAQ14241 798 aaKnown RBP4.98□□□□□ -1.61
SPG11-225ENST00000561391 KRT28Q7Z3Y7 464 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 SIX5Q8N196 739 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 TSEN2Q8NCE0 465 aaKnown RBP4.98□□□□□ -1.61
SPG11-225ENST00000561391 NLGN2Q8NFZ4 835 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 ZIC5Q96T25 663 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 KRTAP17-1Q9BYP8 105 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 STRN4Q9NRL3 753 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 AATKQ6ZMQ8 1374 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 ADGRB2O60241 1585 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 RREB1Q92766 1687 aa4.98□□□□□ -1.61
SPG11-225ENST00000561391 SPATA31A5Q5VU36 1347 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 SPATA31A3Q5VYP0 1347 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 SPATA31A7Q8IWB4 1347 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 ADGRB3O60242 1522 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 EHBP1L1Q8N3D4 1523 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 TMEM229AB2RXF0 380 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 PAX4O43316 350 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 ALBP02768 609 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 SCNN1DP51172 638 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 SMTNP53814 917 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 MLLT1Q03111 559 aaPredicted RBP4.97□□□□□ -1.61
SPG11-225ENST00000561391 PDE4CQ08493 712 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 FZD5Q13467 585 aa4.97□□□□□ -1.61
SPG11-225ENST00000561391 NEUROD1Q13562 356 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms